This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1og6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:47, 17 April 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1og6.jpg|left|200px]]
 
-
{{Structure
+
==ydhF, an aldo-keto reductase from E.coli complexed with NADPH==
-
|PDB= 1og6 |SIZE=350|CAPTION= <scene name='initialview01'>1og6</scene>, resolution 2.8&Aring;
+
<StructureSection load='1og6' size='340' side='right'caption='[[1og6]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
-
|SITE= <scene name='pdbsite=AC1:Nap+Binding+Site+For+Chain+C'>AC1</scene>
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene>
+
<table><tr><td colspan='2'>[[1og6]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OG6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OG6 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1og6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1og6 OCA], [https://pdbe.org/1og6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1og6 RCSB], [https://www.ebi.ac.uk/pdbsum/1og6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1og6 ProSAT], [https://www.topsan.org/Proteins/BIGS/1og6 TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1og6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1og6 OCA], [http://www.ebi.ac.uk/pdbsum/1og6 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1og6 RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/YDHF_ECOLI YDHF_ECOLI] May function as oxidoreductase (Potential).
-
 
+
== Evolutionary Conservation ==
-
'''YDHF, AN ALDO-KETO REDUCTASE FROM E.COLI COMPLEXED WITH NADPH'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/og/1og6_consurf.spt"</scriptWhenChecked>
-
1OG6 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OG6 OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Escherichia coli]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: Abergel, C.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1og6 ConSurf].
-
[[Category: Claverie, J M.]]
+
<div style="clear:both"></div>
-
[[Category: IGS-CNRS, France BIGSBacterial targets at.]]
+
__TOC__
-
[[Category: Jeudy, S.]]
+
</StructureSection>
-
[[Category: aldo-keto reductase]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: alpha/beta barrel]]
+
[[Category: Large Structures]]
-
[[Category: bacterial targets at igs-cnr]]
+
[[Category: Abergel C]]
-
[[Category: big]]
+
[[Category: Claverie JM]]
-
[[Category: france]]
+
[[Category: Jeudy S]]
-
[[Category: nadph-dependant]]
+
-
[[Category: oxidoreductase]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 22:44:53 2008''
+

Current revision

ydhF, an aldo-keto reductase from E.coli complexed with NADPH

PDB ID 1og6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools