5lop

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'''Unreleased structure'''
 
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The entry 5lop is ON HOLD until Paper Publication
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==Structure of the active form of /K. lactis/ Dcp1-Dcp2-Edc3 decapping complex bound to m7GDP==
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<StructureSection load='5lop' size='340' side='right'caption='[[5lop]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5lop]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Kluyveromyces_lactis_NRRL_Y-1140 Kluyveromyces lactis NRRL Y-1140]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LOP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5LOP FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=M7G:7N-METHYL-8-HYDROGUANOSINE-5-DIPHOSPHATE'>M7G</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5lop FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lop OCA], [https://pdbe.org/5lop PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5lop RCSB], [https://www.ebi.ac.uk/pdbsum/5lop PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5lop ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q6CPV9_KLULA Q6CPV9_KLULA]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Elimination of the 5' cap of eukaryotic mRNAs, known as decapping, is considered to be a crucial, irreversible and highly regulated step required for the rapid degradation of mRNA by Xrn1, the major cytoplasmic 5'-3' exonuclease. Decapping is accomplished by the recruitment of a protein complex formed by the Dcp2 catalytic subunit and its Dcp1 cofactor. However, this complex has a low intrinsic enzymatic activity and requires several accessory proteins such as the Lsm1-7 complex, Pat1, Edc1-Edc2 and/or Edc3 to be fully active. Here we present the crystal structure of the active form of the yeast Kluyveromyces lactis Dcp1-Dcp2 enzyme bound to its product (m7GDP) and its potent activator Edc3. This structure of the Dcp1-Dcp2 complex bound to a cap analog further explains previously published data on substrate binding and provides hints as to the mechanism of Edc3-mediated Dcp2 activation.
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Authors: Charenton, C., Taverniti, V., Gaudon-Plesse, C., Back, R., Seraphin, B., Graille, M.
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Structure of the active form of Dcp1-Dcp2 decapping enzyme bound to m7GDP and its Edc3 activator.,Charenton C, Taverniti V, Gaudon-Plesse C, Back R, Seraphin B, Graille M Nat Struct Mol Biol. 2016 Oct 3. doi: 10.1038/nsmb.3300. PMID:27694841<ref>PMID:27694841</ref>
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Description: Structure of an RNA decay enzyme
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Graille, M]]
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<div class="pdbe-citations 5lop" style="background-color:#fffaf0;"></div>
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[[Category: Taverniti, V]]
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== References ==
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[[Category: Back, R]]
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<references/>
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[[Category: Seraphin, B]]
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__TOC__
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[[Category: Charenton, C]]
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</StructureSection>
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[[Category: Gaudon-Plesse, C]]
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[[Category: Kluyveromyces lactis NRRL Y-1140]]
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[[Category: Large Structures]]
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[[Category: Back R]]
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[[Category: Charenton C]]
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[[Category: Gaudon-Plesse C]]
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[[Category: Graille M]]
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[[Category: Seraphin B]]
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[[Category: Taverniti V]]

Current revision

Structure of the active form of /K. lactis/ Dcp1-Dcp2-Edc3 decapping complex bound to m7GDP

PDB ID 5lop

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