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5lpg
From Proteopedia
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==Structure of NUDT15 in complex with 6-thio-GMP== | ==Structure of NUDT15 in complex with 6-thio-GMP== | ||
| - | <StructureSection load='5lpg' size='340' side='right' caption='[[5lpg]], [[Resolution|resolution]] 1.70Å' scene=''> | + | <StructureSection load='5lpg' size='340' side='right'caption='[[5lpg]], [[Resolution|resolution]] 1.70Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5lpg]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LPG OCA]. For a <b>guided tour on the structure components</b> use [ | + | <table><tr><td colspan='2'>[[5lpg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LPG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5LPG FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=71V:[(2~{R},3~{S},4~{R},5~{R})-5-(2-AZANYL-6-SULFANYL-PURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYL+DIHYDROGEN+PHOSPHATE'>71V</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=71V:[(2~{R},3~{S},4~{R},5~{R})-5-(2-AZANYL-6-SULFANYL-PURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYL+DIHYDROGEN+PHOSPHATE'>71V</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5lpg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lpg OCA], [https://pdbe.org/5lpg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5lpg RCSB], [https://www.ebi.ac.uk/pdbsum/5lpg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5lpg ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/NUD15_HUMAN NUD15_HUMAN] Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can degrade 8-oxo-dGTP in vitro, suggesting that it may remove an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine) from DNA and the nucleotide pool, thereby preventing misincorporation of 8-oxo-dGTP into DNA thus preventing A:T to C:G transversions. Its substrate specificity in vivo however remains unclear (By similarity). May have a role in DNA synthesis and cell cycle progression through the interaction with PCNA.<ref>PMID:19419956</ref> <ref>PMID:22556419</ref> |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Homo sapiens]] |
| - | [[Category: Bevc | + | [[Category: Large Structures]] |
| - | [[Category: Carter | + | [[Category: Bevc L]] |
| - | [[Category: Hagenkort | + | [[Category: Carter M]] |
| - | [[Category: Helleday | + | [[Category: Hagenkort A]] |
| - | [[Category: Herr | + | [[Category: Helleday T]] |
| - | [[Category: Homan | + | [[Category: Herr P]] |
| - | [[Category: Jemth | + | [[Category: Homan E]] |
| - | [[Category: Masuyer | + | [[Category: Jemth A-S]] |
| - | [[Category: Page | + | [[Category: Masuyer G]] |
| - | [[Category: Rehling | + | [[Category: Page BDG]] |
| - | [[Category: Stenmark | + | [[Category: Rehling D]] |
| - | [[Category: Valerie | + | [[Category: Stenmark P]] |
| - | + | [[Category: Valerie NCK]] | |
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Current revision
Structure of NUDT15 in complex with 6-thio-GMP
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Categories: Homo sapiens | Large Structures | Bevc L | Carter M | Hagenkort A | Helleday T | Herr P | Homan E | Jemth A-S | Masuyer G | Page BDG | Rehling D | Stenmark P | Valerie NCK
