This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5kyu

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:45, 4 October 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==crystal structure of Sec23 and TANGO1 peptide2 complex==
==crystal structure of Sec23 and TANGO1 peptide2 complex==
-
<StructureSection load='5kyu' size='340' side='right' caption='[[5kyu]], [[Resolution|resolution]] 3.51&Aring;' scene=''>
+
<StructureSection load='5kyu' size='340' side='right'caption='[[5kyu]], [[Resolution|resolution]] 3.51&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5kyu]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KYU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KYU FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5kyu]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KYU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5KYU FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.512&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5kyy|5kyy]], [[5kyx|5kyx]], [[5kyw|5kyw]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5kyu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kyu OCA], [http://pdbe.org/5kyu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kyu RCSB], [http://www.ebi.ac.uk/pdbsum/5kyu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kyu ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5kyu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kyu OCA], [https://pdbe.org/5kyu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5kyu RCSB], [https://www.ebi.ac.uk/pdbsum/5kyu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5kyu ProSAT]</span></td></tr>
</table>
</table>
-
== Disease ==
 
-
[[http://www.uniprot.org/uniprot/SC23A_HUMAN SC23A_HUMAN]] Defects in SEC23A are the cause of craniolenticulosutural dysplasia (CLSD) [MIM:[http://omim.org/entry/607812 607812]]; also known as cranio-lenticulo-sutural dysplasia. CLSD is an autosomal recessive syndrome characterized by late-closing fontanels, sutural cataracts, facial dysmorphisms and skeletal defects.<ref>PMID:16980979</ref>
 
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/SC23A_HUMAN SC23A_HUMAN]] Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex. [[http://www.uniprot.org/uniprot/SC24D_HUMAN SC24D_HUMAN]] Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.
+
[https://www.uniprot.org/uniprot/SC24D_HUMAN SC24D_HUMAN] Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 25: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Goldberg, J]]
+
[[Category: Homo sapiens]]
-
[[Category: Ma, W]]
+
[[Category: Large Structures]]
-
[[Category: Cargo adapter]]
+
[[Category: Goldberg J]]
-
[[Category: Collagen secretion]]
+
[[Category: Ma W]]
-
[[Category: Copii coat]]
+
-
[[Category: Protein transport]]
+
-
[[Category: Vesicle]]
+

Current revision

crystal structure of Sec23 and TANGO1 peptide2 complex

PDB ID 5kyu

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools