We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

5l25

From Proteopedia

(Difference between revisions)

Jump to: navigation, search

Current revision

Crystal Structure of Arabidopsis thaliana Bor1

Structural highlights

5l25 is a 1 chain structure with sequence from Arabidopsis thaliana. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 4.11Å
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

BOR1_ARATH Efflux-type boron transporter for xylem loading, responsive of boron translocation from roots to shoots under boron limitation. Under boron excess, BOR1 is transferred from the plasma membrane via the endosomes to the vacuole for degradation. Boron is essential for maintaining the integrity of plants cell walls.^[1] ^[2]

Publication Abstract from PubMed

Boron is essential for plant growth because of its incorporation into plant cell walls; however, in excess it is toxic to plants. Boron transport and homeostasis in plants is regulated in part by the borate efflux transporter Bor1, a member of the solute carrier (SLC) 4 transporter family with homology to the human bicarbonate transporter Band 3. Here, we present the 4.1-A resolution crystal structure of Arabidopsis thaliana Bor1. The structure displays a dimeric architecture in which dimerization is mediated by centralized Gate domains. Comparisons with a structure of Band 3 in an outward-open state reveal that the Core domains of Bor1 have rotated inwards to achieve an occluded state. Further structural comparisons with UapA, a xanthine transporter from the nucleobase-ascorbate transporter family, show that the downward pivoting of the Core domains relative to the Gate domains may access an inward-open state. These results suggest that the SLC4, SLC26, and nucleobase-ascorbate transporter families all share an elevator transport mechanism in which alternating access is provided by Core domains that carry substrates across a membrane.

Structure of Bor1 supports an elevator transport mechanism for SLC4 anion exchangers.,Thurtle-Schmidt BH, Stroud RM Proc Natl Acad Sci U S A. 2016 Sep 6. pii: 201612603. PMID:27601653^[3]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Miwa K, Takano J, Fujiwara T. Improvement of seed yields under boron-limiting conditions through overexpression of BOR1, a boron transporter for xylem loading, in Arabidopsis thaliana. Plant J. 2006 Jun;46(6):1084-91. PMID:16805739 doi:http://dx.doi.org/10.1111/j.1365-313X.2006.02763.x
↑ Noguchi K, Yasumori M, Imai T, Naito S, Matsunaga T, Oda H, Hayashi H, Chino M, Fujiwara T. bor1-1, an Arabidopsis thaliana mutant that requires a high level of boron. Plant Physiol. 1997 Nov;115(3):901-6. PMID:9390427
↑ Thurtle-Schmidt BH, Stroud RM. Structure of Bor1 supports an elevator transport mechanism for SLC4 anion exchangers. Proc Natl Acad Sci U S A. 2016 Sep 6. pii: 201612603. PMID:27601653 doi:http://dx.doi.org/10.1073/pnas.1612603113

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5l25"

Categories: Arabidopsis thaliana | Large Structures | Stroud RM | Thurtle-Schmidt BH

@@ Line 1: / Line 1: @@
 ==Crystal Structure of Arabidopsis thaliana Bor1==
-<StructureSection load='5l25' size='340' side='right' caption='[[5l25]], [[Resolution|resolution]] 4.11&Aring;' scene=''>
+<StructureSection load='5l25' size='340' side='right'caption='[[5l25]], [[Resolution|resolution]] 4.11&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5l25]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5L25 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5L25 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5l25]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5L25 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5L25 FirstGlance]. <br>
-</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5l25 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5l25 OCA], [http://pdbe.org/5l25 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5l25 RCSB], [http://www.ebi.ac.uk/pdbsum/5l25 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5l25 ProSAT]</span></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 4.11&#8491;</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5l25 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5l25 OCA], [https://pdbe.org/5l25 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5l25 RCSB], [https://www.ebi.ac.uk/pdbsum/5l25 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5l25 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/BOR1_ARATH BOR1_ARATH]] Efflux-type boron transporter for xylem loading, responsive of boron translocation from roots to shoots under boron limitation. Under boron excess, BOR1 is transferred from the plasma membrane via the endosomes to the vacuole for degradation. Boron is essential for maintaining the integrity of plants cell walls.<ref>PMID:16805739</ref> <ref>PMID:9390427</ref>
+[https://www.uniprot.org/uniprot/BOR1_ARATH BOR1_ARATH] Efflux-type boron transporter for xylem loading, responsive of boron translocation from roots to shoots under boron limitation. Under boron excess, BOR1 is transferred from the plasma membrane via the endosomes to the vacuole for degradation. Boron is essential for maintaining the integrity of plants cell walls.<ref>PMID:16805739</ref> <ref>PMID:9390427</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 21: / Line 22: @@
 __TOC__
 </StructureSection>
-[[Category: Stroud, R M]]
+[[Category: Arabidopsis thaliana]]
-[[Category: Thurtle-Schmidt, B H]]
+[[Category: Large Structures]]
-[[Category: Anion exchanger]]
+[[Category: Stroud RM]]
-[[Category: Membrane protein]]
+[[Category: Thurtle-Schmidt BH]]
-[[Category: Slc4]]
-[[Category: Transport protein]]

5l25

From Proteopedia

Current revision

Crystal Structure of Arabidopsis thaliana Bor1

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox