5iju

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:58, 30 August 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
==Structure of an AA10 Lytic Polysaccharide Monooxygenase from Bacillus amyloliquefaciens with Cu(II) bound==
==Structure of an AA10 Lytic Polysaccharide Monooxygenase from Bacillus amyloliquefaciens with Cu(II) bound==
-
<StructureSection load='5iju' size='340' side='right' caption='[[5iju]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
+
<StructureSection load='5iju' size='340' side='right'caption='[[5iju]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5iju]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IJU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5IJU FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5iju]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_amyloliquefaciens Bacillus amyloliquefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IJU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5IJU FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2yoy|2yoy]], [[2yox|2yox]], [[2yow|2yow]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5iju FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5iju OCA], [http://pdbe.org/5iju PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5iju RCSB], [http://www.ebi.ac.uk/pdbsum/5iju PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5iju ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5iju FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5iju OCA], [https://pdbe.org/5iju PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5iju RCSB], [https://www.ebi.ac.uk/pdbsum/5iju PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5iju ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
-
The capacity of metal-dependent fungal and bacterial polysaccharide oxygenases, termed GH61 and CBM33 respectively, to potentiate the enzymatic degradation of cellulose opens up new possibilities for the conversion of recalcitrant biomass to biofuels. GH61s have already been shown to be unique metalloenzymes containing an active site with a mononuclear copper ion coordinated by two histidines, one of which is an unusual -N methylated N-terminal histidine. We now report the structural and spectroscopic characterization of the corresponding copper CBM33 enzymes. CBM33 binds copper with high affinity at a mononuclear site, significantly stabilizing the enzyme. X-band EPR spectroscopy of Cu(II)-CBM33 shows a mononuclear type 2 copper site with the copper ion in with a distorted axial coordination sphere, into which azide will coordinate as evidenced by the concomitant formation of a new absorption band in the UV/vis spectrum at 390 nm. The enzyme's three-dimensional structure contains copper which has been photo-reduced to Cu(I) by the incident X-rays, confirmed by x-ray absorption/fluorescence studies of both aqueous solution and intact crystals of Cu-CBM33. The single copper(I) ion is ligated in a T-shaped configuration by three nitrogen atoms from two histidine side chains and the amino terminus, similar to the endogenous copper coordination geometry found in fungal GH61.
+
The enzymatic deconstruction of recalcitrant polysaccharide biomass is central to the conversion of these substrates for societal benefit, such as in biofuels. Traditional models for enzyme-catalysed polysaccharide degradation involved the synergistic action of endo-, exo- and processive glycoside hydrolases working in concert to hydrolyse the substrate. More recently this model has been succeeded by one featuring a newly discovered class of mononuclear copper enzymes: lytic polysaccharide monooxygenases (LPMOs; classified as Auxiliary Activity (AA) enzymes in the CAZy classification). In 2013, the structure of an LPMO from Bacillus amyloliquefaciens, BaAA10, was solved with the Cu centre photoreduced to Cu(i) in the X-ray beam. Here we present the catalytic activity of BaAA10. We show that it is a chitin-active LPMO, active on both alpha and beta chitin, with the Cu(ii) binding with low nM KD, and the substrate greatly increasing the thermal stability of the enzyme. A spiral data collection strategy has been used to facilitate access to the previously unobservable Cu(ii) state of the active centre, revealing a coordination geometry around the copper which is distorted from axial symmetry, consistent with the previous findings from EPR spectroscopy.
-
The copper active site of CBM33 polysaccharide oxygenases.,Hemsworth GR, Taylor E, Kim RQ, Gregory RC, Lewis SJ, Turkenburg JP, Parkin A, Davies GJ, Walton PH J Am Chem Soc. 2013 Mar 29. PMID:23540833<ref>PMID:23540833</ref>
+
Activity, stability and 3-D structure of the Cu(ii) form of a chitin-active lytic polysaccharide monooxygenase from Bacillus amyloliquefaciens.,Gregory RC, Hemsworth GR, Turkenburg JP, Hart SJ, Walton PH, Davies GJ Dalton Trans. 2016 Sep 29. PMID:27722375<ref>PMID:27722375</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
<div class="pdbe-citations 5iju" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5iju" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Monooxygenase 3D structures|Monooxygenase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Davies, G J]]
+
[[Category: Bacillus amyloliquefaciens]]
-
[[Category: Gregory, R C]]
+
[[Category: Large Structures]]
-
[[Category: Hart, S J]]
+
[[Category: Davies GJ]]
-
[[Category: Hemsworth, G R]]
+
[[Category: Gregory RC]]
-
[[Category: Turkenburg, J P]]
+
[[Category: Hart SJ]]
-
[[Category: Walton, P H]]
+
[[Category: Hemsworth GR]]
-
[[Category: Cazy aa10]]
+
[[Category: Turkenburg JP]]
-
[[Category: Copper ii]]
+
[[Category: Walton PH]]
-
[[Category: Lytic polysaccharide monooxygenase]]
+
-
[[Category: Oxidoreductase]]
+

Current revision

Structure of an AA10 Lytic Polysaccharide Monooxygenase from Bacillus amyloliquefaciens with Cu(II) bound

PDB ID 5iju

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools