5lp6
From Proteopedia
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==Crystal structure of Tubulin-Stathmin-TTL-Thiocolchicine Complex== | ==Crystal structure of Tubulin-Stathmin-TTL-Thiocolchicine Complex== | ||
- | <StructureSection load='5lp6' size='340' side='right' caption='[[5lp6]], [[Resolution|resolution]] 2.90Å' scene=''> | + | <StructureSection load='5lp6' size='340' side='right'caption='[[5lp6]], [[Resolution|resolution]] 2.90Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[5lp6]] is a 6 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[5lp6]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus], [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus] and [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LP6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5LP6 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=71P:~{N}-[(7~{R})-1,2,3-TRIMETHOXY-10-METHYLSULFANYL-9-OXIDANYLIDENE-6,7-DIHYDRO-5~{H}-BENZO[A]HEPTALEN-7-YL]ETHANAMIDE'>71P</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9Å</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=71P:~{N}-[(7~{R})-1,2,3-TRIMETHOXY-10-METHYLSULFANYL-9-OXIDANYLIDENE-6,7-DIHYDRO-5~{H}-BENZO[A]HEPTALEN-7-YL]ETHANAMIDE'>71P</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5lp6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lp6 OCA], [https://pdbe.org/5lp6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5lp6 RCSB], [https://www.ebi.ac.uk/pdbsum/5lp6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5lp6 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
- | [ | + | [https://www.uniprot.org/uniprot/TBA1B_BOVIN TBA1B_BOVIN] Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. |
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Microtubule (MT) dynamic behaviour is an attractive drug target for chemotherapy, whose regulation by MT-stabilizing and destabilizing agents has been fruitfully applied in treating several types of cancers. MT-stabilizing agents are also emerging as potential remedies for neurodegenerative conditions, such as Alzheimer's and Parkinson's disease, although single-target drugs are not expected to fully cure these complex pathologies. Drug combination often displays enhanced efficacy with respect to mono-therapies. In particular, MT-targeting bivalent compounds (MTBCs) represent a promising class of molecules; however, surprisingly, the majority of MTBCs reported so far exhibit equal if not less efficacy than their building monomers. In order to shed light on MTBCs poor performance, we characterised through a set of complementary approaches thiocolchine (TH) and two bivalent TH-homodimers as prototype molecules. First, the binding affinities of these three molecules were assessed, then we obtained the crystallographic structure of a tubulin-TH complex. The binding affinities were interpreted in light of structural data and of molecular dynamics simulations. Finally, their effects on MT cytoskeleton and cell survival were validated on HeLa cells. The ensemble of these data provides chemical and structural considerations on how a successful rational design of MTBCs should be conceived. | ||
+ | |||
+ | Tools for the rational design of bivalent microtubule-targeting drugs.,Marangon J, Christodoulou MS, Casagrande FV, Tiana G, Dalla Via L, Aliverti A, Passarella D, Cappelletti G, Ricagno S Biochem Biophys Res Commun. 2016 Oct 7;479(1):48-53. doi:, 10.1016/j.bbrc.2016.09.022. Epub 2016 Sep 7. PMID:27613098<ref>PMID:27613098</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 5lp6" style="background-color:#fffaf0;"></div> | ||
+ | |||
+ | ==See Also== | ||
+ | *[[Stathmin-4 3D structures|Stathmin-4 3D structures]] | ||
+ | *[[Tubulin 3D Structures|Tubulin 3D Structures]] | ||
+ | *[[Tubulin tyrosine ligase|Tubulin tyrosine ligase]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Bos taurus]] | [[Category: Bos taurus]] | ||
- | [[Category: | + | [[Category: Gallus gallus]] |
- | [[Category: | + | [[Category: Large Structures]] |
- | [[Category: | + | [[Category: Rattus norvegicus]] |
- | [[Category: | + | [[Category: Aliverti A]] |
- | [[Category: | + | [[Category: Cappelletti G]] |
- | [[Category: | + | [[Category: Casagrande F]] |
- | [[Category: | + | [[Category: Christodoulou M]] |
- | + | [[Category: Dalla Via L]] | |
- | [[Category: Via | + | [[Category: Marangon J]] |
- | [[Category: | + | [[Category: Passarella D]] |
- | [[Category: | + | [[Category: Ricagno S]] |
- | [[Category: | + | [[Category: Tiana G]] |
- | [[Category: | + | |
- | + |
Current revision
Crystal structure of Tubulin-Stathmin-TTL-Thiocolchicine Complex
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