This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5j9c

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:55, 6 September 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of peroxiredoxin Asp f3 C31S/C61S variant==
==Crystal structure of peroxiredoxin Asp f3 C31S/C61S variant==
-
<StructureSection load='5j9c' size='340' side='right' caption='[[5j9c]], [[Resolution|resolution]] 1.96&Aring;' scene=''>
+
<StructureSection load='5j9c' size='340' side='right'caption='[[5j9c]], [[Resolution|resolution]] 1.96&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5j9c]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5J9C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5J9C FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5j9c]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_fumigatus_Af293 Aspergillus fumigatus Af293]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5J9C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5J9C FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.956&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5j9b|5j9b]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peroxiredoxin Peroxiredoxin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.15 1.11.1.15] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5j9c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j9c OCA], [https://pdbe.org/5j9c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5j9c RCSB], [https://www.ebi.ac.uk/pdbsum/5j9c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5j9c ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5j9c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j9c OCA], [http://pdbe.org/5j9c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5j9c RCSB], [http://www.ebi.ac.uk/pdbsum/5j9c PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5j9c ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PRX5_ASPFU PRX5_ASPFU] Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides and as sensor of hydrogen peroxide-mediated signaling events. Required for virulence.<ref>PMID:27624005</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 18: Line 19:
</div>
</div>
<div class="pdbe-citations 5j9c" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5j9c" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Peroxiredoxin 3D structures|Peroxiredoxin 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Peroxiredoxin]]
+
[[Category: Aspergillus fumigatus Af293]]
-
[[Category: Bagramyan, K]]
+
[[Category: Large Structures]]
-
[[Category: Bzymek, K P]]
+
[[Category: Bagramyan K]]
-
[[Category: Hong, T B]]
+
[[Category: Bzymek KP]]
-
[[Category: Kalkum, M]]
+
[[Category: Hong TB]]
-
[[Category: Williams, J C]]
+
[[Category: Kalkum M]]
-
[[Category: Aspergillus]]
+
[[Category: Williams JC]]
-
[[Category: Oxidoreductase]]
+

Current revision

Crystal structure of peroxiredoxin Asp f3 C31S/C61S variant

PDB ID 5j9c

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools