5kj7

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'''Unreleased structure'''
 
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The entry 5kj7 is ON HOLD
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==Structure of the Ca2+-bound synaptotagmin-1 SNARE complex (long unit cell form) - from XFEL diffraction==
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<StructureSection load='5kj7' size='340' side='right'caption='[[5kj7]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5kj7]] is a 11 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KJ7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5KJ7 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5kj7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kj7 OCA], [https://pdbe.org/5kj7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5kj7 RCSB], [https://www.ebi.ac.uk/pdbsum/5kj7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5kj7 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/VAMP3_RAT VAMP3_RAT] SNARE involved in vesicular transport from the late endosomes to the trans-Golgi network.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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X-ray free electron lasers (XFELs) reduce the effects of radiation damage on macromolecular diffraction data and thereby extend the limiting resolution. Previously, we adapted classical post-refinement techniques to XFEL diffraction data to produce accurate diffraction data sets from a limited number of diffraction images (Uervirojnangkoorn et al., 2015), and went on to use these techniques to obtain a complete data set from crystals of the synaptotagmin-1 / SNARE complex and to determine the structure at 3.5 A resolution (Zhou et al., 2015). Here, we describe new advances in our methods and present a reprocessed XFEL data set of the synaptotagmin-1 / SNARE complex. The reprocessing produced small improvements in electron density maps and the refined atomic model. The maps also contained more information than those of a lower resolution (4.1 A) synchrotron data set. Processing a set of simulated XFEL diffraction images revealed that our methods yield accurate data and atomic models.
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Authors: Lyubimov, A.Y., Uervirojnangkoorn, M., Zhou, Q., Zhao, M., Sauter, N.K., Brewster, A.S., Weis, W.I., Brunger, A.T.
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Advances in X-ray free electron laser (XFEL) diffraction data processing applied to the crystal structure of the synaptotagmin-1 / SNARE complex.,Lyubimov AY, Uervirojnangkoorn M, Zeldin OB, Zhou Q, Zhao M, Brewster AS, Michels-Clark T, Holton JM, Sauter NK, Weis WI, Brunger AT Elife. 2016 Oct 12;5. pii: e18740. doi: 10.7554/eLife.18740. PMID:27731796<ref>PMID:27731796</ref>
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Description: Structure of the Ca2+-bound synaptotagmin-1 SNARE complex (long unit cell form) -from XFEL diffraction
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Lyubimov, A.Y]]
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<div class="pdbe-citations 5kj7" style="background-color:#fffaf0;"></div>
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[[Category: Uervirojnangkoorn, M]]
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[[Category: Zhou, Q]]
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==See Also==
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[[Category: Zhao, M]]
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*[[Synaptosomal-associated protein|Synaptosomal-associated protein]]
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[[Category: Brunger, A.T]]
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*[[Synaptotagmin 3D structures|Synaptotagmin 3D structures]]
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[[Category: Sauter, N.K]]
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*[[Syntaxin 3D structures|Syntaxin 3D structures]]
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[[Category: Brewster, A.S]]
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*[[Vesicle-associated membrane protein|Vesicle-associated membrane protein]]
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[[Category: Weis, W.I]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Rattus norvegicus]]
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[[Category: Brewster AS]]
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[[Category: Brunger AT]]
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[[Category: Lyubimov AY]]
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[[Category: Sauter NK]]
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[[Category: Uervirojnangkoorn M]]
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[[Category: Weis WI]]
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[[Category: Zhao M]]
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[[Category: Zhou Q]]

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Structure of the Ca2+-bound synaptotagmin-1 SNARE complex (long unit cell form) - from XFEL diffraction

PDB ID 5kj7

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