This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5k6u

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:42, 27 September 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Sidekick-1 immunoglobulin domains 1-4, crystal form 1==
==Sidekick-1 immunoglobulin domains 1-4, crystal form 1==
-
<StructureSection load='5k6u' size='340' side='right' caption='[[5k6u]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+
<StructureSection load='5k6u' size='340' side='right'caption='[[5k6u]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5k6u]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5K6U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5K6U FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5k6u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5K6U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5K6U FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CS:CESIUM+ION'>CS</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.201&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5k6w|5k6w]], [[5k6x|5k6x]], [[5k6y|5k6y]], [[5k6z|5k6z]], [[5k70|5k70]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CS:CESIUM+ION'>CS</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5k6u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5k6u OCA], [http://pdbe.org/5k6u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5k6u RCSB], [http://www.ebi.ac.uk/pdbsum/5k6u PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5k6u ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5k6u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5k6u OCA], [https://pdbe.org/5k6u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5k6u RCSB], [https://www.ebi.ac.uk/pdbsum/5k6u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5k6u ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/SDK1_MOUSE SDK1_MOUSE]] Adhesion molecule that promotes lamina-specific synaptic connections in the retina. Expressed in specific subsets of interneurons and retinal ganglion cells (RGCs) and promotes synaptic connectivity via homophilic interactions.[UniProtKB:Q8AV58]
+
[https://www.uniprot.org/uniprot/SDK1_MOUSE SDK1_MOUSE] Adhesion molecule that promotes lamina-specific synaptic connections in the retina. Expressed in specific subsets of interneurons and retinal ganglion cells (RGCs) and promotes synaptic connectivity via homophilic interactions.[UniProtKB:Q8AV58]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 23: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Goodman, K M]]
+
[[Category: Large Structures]]
-
[[Category: Honig, B]]
+
[[Category: Mus musculus]]
-
[[Category: Jin, X]]
+
[[Category: Goodman KM]]
-
[[Category: Mannepalli, S]]
+
[[Category: Honig B]]
-
[[Category: Shapiro, L]]
+
[[Category: Jin X]]
-
[[Category: Cell adhesion]]
+
[[Category: Mannepalli S]]
-
[[Category: Immunoglobulin]]
+
[[Category: Shapiro L]]

Current revision

Sidekick-1 immunoglobulin domains 1-4, crystal form 1

PDB ID 5k6u

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools