5f6z
From Proteopedia
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==Sandercyanin Fluorescent Protein purified from Sander vitreus== | ==Sandercyanin Fluorescent Protein purified from Sander vitreus== | ||
| - | <StructureSection load='5f6z' size='340' side='right' caption='[[5f6z]], [[Resolution|resolution]] 2.25Å' scene=''> | + | <StructureSection load='5f6z' size='340' side='right'caption='[[5f6z]], [[Resolution|resolution]] 2.25Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5f6z]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5F6Z OCA]. For a <b>guided tour on the structure components</b> use [ | + | <table><tr><td colspan='2'>[[5f6z]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Sander_vitreus Sander vitreus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5F6Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5F6Z FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.248Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BLA:BILIVERDINE+IX+ALPHA'>BLA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5f6z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5f6z OCA], [https://pdbe.org/5f6z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5f6z RCSB], [https://www.ebi.ac.uk/pdbsum/5f6z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5f6z ProSAT]</span></td></tr> |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/A0A1D5B369_SANVI A0A1D5B369_SANVI] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The walleye (Sander vitreus) is a golden yellow fish that inhabits the Northern American lakes. The recent sightings of the blue walleye and the correlation of its sighting to possible increased UV radiation have been proposed earlier. The underlying molecular basis of its adaptation to increased UV radiation is the presence of a protein (Sandercyanin)-ligand complex in the mucus of walleyes. Degradation of heme by UV radiation results in the formation of Biliverdin IXalpha (BLA), the chromophore bound to Sandercyanin. We show that Sandercyanin is a monomeric protein that forms stable homotetramers on addition of BLA to the protein. A structure of the Sandercyanin-BLA complex, purified from the fish mucus, reveals a glycosylated protein with a lipocalin fold. This protein-ligand complex absorbs light in the UV region (lambdamax of 375 nm) and upon excitation at this wavelength emits in the red region (lambdamax of 675 nm). Unlike all other known biliverdin-bound fluorescent proteins, the chromophore is noncovalently bound to the protein. We provide here a molecular rationale for the observed spectral properties of Sandercyanin. | ||
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| + | Blue protein with red fluorescence.,Ghosh S, Yu CL, Ferraro DJ, Sudha S, Pal SK, Schaefer WF, Gibson DT, Ramaswamy S Proc Natl Acad Sci U S A. 2016 Oct 11;113(41):11513-11518. Epub 2016 Sep 29. PMID:27688756<ref>PMID:27688756</ref> | ||
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| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 5f6z" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Sander vitreus]] |
| - | [[Category: | + | [[Category: Ferraro D]] |
| - | [[Category: | + | [[Category: Ghosh S]] |
| - | [[Category: | + | [[Category: Gibson DT]] |
| - | [[Category: | + | [[Category: Pal S]] |
| - | + | [[Category: Schaefer W]] | |
| - | [[Category: | + | [[Category: Subramanian R]] |
| - | [[Category: | + | [[Category: Sudha S]] |
| - | [[Category: | + | [[Category: Yu CL]] |
| - | [[Category: | + | |
| - | + | ||
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Current revision
Sandercyanin Fluorescent Protein purified from Sander vitreus
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Categories: Large Structures | Sander vitreus | Ferraro D | Ghosh S | Gibson DT | Pal S | Schaefer W | Subramanian R | Sudha S | Yu CL
