1pb1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:06, 14 February 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1pb1.jpg|left|200px]]
 
-
{{Structure
+
==A four location model to explain the stereospecificity of proteins.==
-
|PDB= 1pb1 |SIZE=350|CAPTION= <scene name='initialview01'>1pb1</scene>, resolution 1.70&Aring;
+
<StructureSection load='1pb1' size='340' side='right'caption='[[1pb1]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ICT:ISOCITRIC+ACID'>ICT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
+
<table><tr><td colspan='2'>[[1pb1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PB1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PB1 FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Isocitrate_dehydrogenase_(NADP(+)) Isocitrate dehydrogenase (NADP(+))], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.42 1.1.1.42] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
|GENE= ICD OR ICDA OR ICDE OR B1136 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ICT:ISOCITRIC+ACID'>ICT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pb1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pb1 OCA], [https://pdbe.org/1pb1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pb1 RCSB], [https://www.ebi.ac.uk/pdbsum/1pb1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pb1 ProSAT]</span></td></tr>
-
|RELATEDENTRY=[[1p8f|1P8F]]
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pb1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pb1 OCA], [http://www.ebi.ac.uk/pdbsum/1pb1 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1pb1 RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/IDH_ECOLI IDH_ECOLI]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pb/1pb1_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pb1 ConSurf].
 +
<div style="clear:both"></div>
-
'''A four location model to explain the stereospecificity of proteins.'''
+
==See Also==
-
 
+
*[[Isocitrate dehydrogenase 3D structures|Isocitrate dehydrogenase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
1PB1 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PB1 OCA].
+
-
 
+
-
==Reference==
+
-
A new model for protein stereospecificity., Mesecar AD, Koshland DE Jr, Nature. 2000 Feb 10;403(6770):614-5. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10688187 10688187]
+
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Isocitrate dehydrogenase (NADP(+))]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Koshland Jr DE]]
-
[[Category: Jr., D E.Koshland.]]
+
[[Category: Mesecar AD]]
-
[[Category: Mesecar, A D.]]
+
-
[[Category: enantiomer]]
+
-
[[Category: isocitrate dehydrogenase]]
+
-
[[Category: l-isocitrate]]
+
-
[[Category: specificity]]
+
-
[[Category: stereospecificity]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 22:57:26 2008''
+

Current revision

A four location model to explain the stereospecificity of proteins.

PDB ID 1pb1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools