Template:ConSurf

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(creating a template that inserts ConSurf div)
Current revision (07:55, 13 October 2016) (edit) (undo)
 
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<a name="Evolutionary_Conservation"></a>
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<noinclude>
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<h2><span class="mw-headline"> Evolutionary Conservation </span></h2>
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== HOW TO USE THIS TEMPLATE: ==
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<div class="floatright">
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You must insert it as <code><nowiki>{{subst:ConSurf|1stp|st}}</nowiki></code>
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<span><a href="/wiki/index.php/Image:Consurf_key_small.gif" class="image"
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title="Consurf key small.gif">
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Where the 2 parameters, <code>1stp</code> and <code>st</code>, need to be adjusted to your case:
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<img alt="" src="/wiki/images/thumb/0/0a/Consurf_key_small.gif/200px-Consurf_key_small.gif"
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* 1st parameter is the PDB ID of the model
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width="200" height="67" border="0" /></a>
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* 2nd parameter is the 2nd and 3rd characters of the PDB ID
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</span>
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</div>
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The result will look like below and will be made a hard-coded content of the page (i.e. the template wikitext is removed and the result is inserted into the page source).
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<p>Check<!-- Jmol -->
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<script>jmolSetTarget('1');
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</noinclude>
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jmolCheckbox('select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script \"/wiki/ConSurf/{{{1}}}/{{{2}}}_consurf.spt\"',
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'script /wiki/extensions/Proteopedia/spt/initialview01.spt','to colour the structure by Evolutionary Conservation',false);</script>,
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<!-- The content below was inserted by the ConSurf template -->
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as determined by <a href="http://consurfdb.tau.ac.il/" class="external text" title="http://consurfdb.tau.ac.il/" rel="nofollow">ConSurfDB</a>. You may read the <a href="/wiki/index.php/Conservation%2C_Evolutionary" title="Conservation, Evolutionary">explanation</a> of the method and the full data available from <a href="http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID={{{2}}}" class="external text" title="http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID={{{2}}}" rel="nofollow">ConSurf</a>.
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== Evolutionary Conservation ==
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</p>
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[[Image:Consurf_key_small.gif|right|200px]]
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Check
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<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>
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select protein; define ~consurf_to_do selected;
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consurf_initial_scene = true;
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script /wiki/ConSurf/{{{2}}}/{{{1}}}_consurf.spt;
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</scriptWhenChecked>
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<scriptWhenUnchecked>
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script /wiki/extensions/Proteopedia/spt/initialview01.spt;
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</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB].
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You may read the [[Conservation%2C_Evolutionary|explanation]]
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of the method and the full data available from
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[http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID={{{1}}} ConSurf].
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<!-- end of content inserted by the ConSurf template -->

Current revision

HOW TO USE THIS TEMPLATE:

You must insert it as {{subst:ConSurf|1stp|st}}

Where the 2 parameters, 1stp and st, need to be adjusted to your case:

  • 1st parameter is the PDB ID of the model
  • 2nd parameter is the 2nd and 3rd characters of the PDB ID

The result will look like below and will be made a hard-coded content of the page (i.e. the template wikitext is removed and the result is inserted into the page source).


Evolutionary Conservation

Check , as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Proteopedia Page Contributors and Editors (what is this?)

Angel Herraez, Jaime Prilusky

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