This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5b2d

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:56, 8 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of Mumps virus hemagglutinin-neuraminidase bound to 3-sialyllactose==
==Crystal structure of Mumps virus hemagglutinin-neuraminidase bound to 3-sialyllactose==
-
<StructureSection load='5b2d' size='340' side='right' caption='[[5b2d]], [[Resolution|resolution]] 2.18&Aring;' scene=''>
+
<StructureSection load='5b2d' size='340' side='right'caption='[[5b2d]], [[Resolution|resolution]] 2.18&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5b2d]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B2D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5B2D FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5b2d]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mumps_orthorubulavirus Mumps orthorubulavirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B2D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5B2D FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SLT:5-(ACETYLAMINO)-3,5-DIDEOXYNON-2-ULOPYRANONOSYL-(2- 3)-BETA-D-LYXO-HEXOPYRANOSYL-(1- 4)HEXOPYRANOSE'>SLT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.177&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5b2c|5b2c]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PRD_900025:3-sialyl-alpha-lactose'>PRD_900025</scene>, <scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Exo-alpha-sialidase Exo-alpha-sialidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.18 3.2.1.18] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5b2d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b2d OCA], [https://pdbe.org/5b2d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5b2d RCSB], [https://www.ebi.ac.uk/pdbsum/5b2d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5b2d ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5b2d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b2d OCA], [http://pdbe.org/5b2d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5b2d RCSB], [http://www.ebi.ac.uk/pdbsum/5b2d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5b2d ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9WAF5_9MONO Q9WAF5_9MONO]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 18: Line 19:
</div>
</div>
<div class="pdbe-citations 5b2d" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5b2d" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Hemagglutinin 3D structures|Hemagglutinin 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Exo-alpha-sialidase]]
+
[[Category: Large Structures]]
-
[[Category: Hashiguchi, T]]
+
[[Category: Mumps orthorubulavirus]]
-
[[Category: Hiramatsu, H]]
+
[[Category: Hashiguchi T]]
-
[[Category: Kohda, D]]
+
[[Category: Hiramatsu H]]
-
[[Category: Kubota, M]]
+
[[Category: Kohda D]]
-
[[Category: Matsuoka, R]]
+
[[Category: Kubota M]]
-
[[Category: Nakayama, T]]
+
[[Category: Matsuoka R]]
-
[[Category: Ohno, S]]
+
[[Category: Nakayama T]]
-
[[Category: Shimizu, K]]
+
[[Category: Ohno S]]
-
[[Category: Shimizu, N]]
+
[[Category: Shimizu K]]
-
[[Category: Suzuki, Y]]
+
[[Category: Shimizu N]]
-
[[Category: Takeuchi, K]]
+
[[Category: Suzuki Y]]
-
[[Category: Terada, T]]
+
[[Category: Takeuchi K]]
-
[[Category: Watanabe, S]]
+
[[Category: Terada T]]
-
[[Category: Yanagi, Y]]
+
[[Category: Watanabe S]]
-
[[Category: Beta-propeller]]
+
[[Category: Yanagi Y]]
-
[[Category: Glycoprotein]]
+
-
[[Category: Receptor binding]]
+
-
[[Category: Sugar]]
+
-
[[Category: Viral protein]]
+

Current revision

Crystal structure of Mumps virus hemagglutinin-neuraminidase bound to 3-sialyllactose

PDB ID 5b2d

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools