5m42

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(New page: '''Unreleased structure''' The entry 5m42 is ON HOLD until Paper Publication Authors: Martinez-Julvez, M., Huijbers, M.M.E., van Berkel, W.J.H., Medina, M. Description: Structure of Th...)
Current revision (18:24, 1 November 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 5m42 is ON HOLD until Paper Publication
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==Structure of Thermus thermophilus L-proline dehydrogenase lacking alpha helices A, B and C==
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<StructureSection load='5m42' size='340' side='right'caption='[[5m42]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5m42]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB27 Thermus thermophilus HB27]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M42 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5M42 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5m42 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m42 OCA], [https://pdbe.org/5m42 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5m42 RCSB], [https://www.ebi.ac.uk/pdbsum/5m42 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5m42 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PRODH_THET2 PRODH_THET2] Converts proline to delta-1-pyrroline-5-carboxylate (PubMed:17344208, PubMed:18426222). Has significant activity against O(2) producing superoxide during proline oxidation catalytic cycle (PubMed:17344208).<ref>PMID:17344208</ref> <ref>PMID:18426222</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Flavoenzymes are versatile biocatalysts containing either FAD or FMN as cofactor. FAD often binds to a Rossmann fold, while FMN prefers a TIM-barrel or flavodoxin-like fold. Proline dehydrogenase is denoted as an exception: it possesses a TIM barrel-like fold while binding FAD. Using a riboflavin auxotrophic Escherichia coli strain and maltose-binding protein as solubility tag, we produced the apoprotein of Thermus thermophilus ProDH (MBP-TtProDH). Remarkably, reconstitution with FAD or FMN revealed that MBP-TtProDH has no preference for either of the two prosthetic groups. Kinetic parameters of both holo forms are similar, as are the dissociation constants for FAD and FMN release. Furthermore, we show that the holo form of MBP-TtProDH, as produced in E. coli TOP10 cells, contains about three times more FMN than FAD. In line with this flavin content, the crystal structure of TtProDH variant DeltaABC, which lacks helices alphaA, alphaB and alphaC, shows no electron density for an AMP moiety of the cofactor. To the best of our knowledge, this is the first example of a flavoenzyme that does not discriminate between FAD and FMN as cofactor. Therefore, classification of TtProDH as an FAD-binding enzyme should be reconsidered.
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Authors: Martinez-Julvez, M., Huijbers, M.M.E., van Berkel, W.J.H., Medina, M.
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Proline dehydrogenase from Thermus thermophilus does not discriminate between FAD and FMN as cofactor.,Huijbers MM, Martinez-Julvez M, Westphal AH, Delgado-Arciniega E, Medina M, van Berkel WJ Sci Rep. 2017 Mar 3;7:43880. doi: 10.1038/srep43880. PMID:28256579<ref>PMID:28256579</ref>
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Description: Structure of Thermus thermophilus L-proline dehydrogenase lacking alpha helices A, B and C
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Medina, M]]
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<div class="pdbe-citations 5m42" style="background-color:#fffaf0;"></div>
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[[Category: Huijbers, M.M.E]]
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== References ==
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[[Category: Martinez-Julvez, M]]
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<references/>
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[[Category: Van Berkel, W.J.H]]
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Thermus thermophilus HB27]]
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[[Category: Huijbers MME]]
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[[Category: Martinez-Julvez M]]
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[[Category: Medina M]]
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[[Category: Van Berkel WJH]]

Current revision

Structure of Thermus thermophilus L-proline dehydrogenase lacking alpha helices A, B and C

PDB ID 5m42

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