1poq

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[[Image:1poq.jpg|left|200px]]
 
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{{Structure
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==Solution Structure of a Superantigen from Yersinia pseudotuberculosis==
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|PDB= 1poq |SIZE=350|CAPTION= <scene name='initialview01'>1poq</scene>
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<StructureSection load='1poq' size='340' side='right'caption='[[1poq]]' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND=
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<table><tr><td colspan='2'>[[1poq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pseudotuberculosis Yersinia pseudotuberculosis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1POQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1POQ FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 20 models</td></tr>
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|GENE= ypmA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=633 Yersinia pseudotuberculosis])
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1poq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1poq OCA], [https://pdbe.org/1poq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1poq RCSB], [https://www.ebi.ac.uk/pdbsum/1poq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1poq ProSAT]</span></td></tr>
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|DOMAIN=
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</table>
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|RELATEDENTRY=
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== Function ==
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1poq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1poq OCA], [http://www.ebi.ac.uk/pdbsum/1poq PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1poq RCSB]</span>
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[https://www.uniprot.org/uniprot/Q57221_YERPU Q57221_YERPU]
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}}
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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'''Solution Structure of a Superantigen from Yersinia pseudotuberculosis'''
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==Overview==
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Superantigens are a class of microbial proteins with the ability to excessively activate T cells by binding to the T cell receptor. The staphylococcal and streptococcal superantigens are closely related in structure and possess an N-terminal domain that resembles an OB fold and a C-terminal domain similar to a beta-grasp fold. Yersinia pseudotuberculosis produces superantigens, YPMa, YPMb, and YPMc, which have no significant amino acid similarity to other proteins. We have determined the crystal and solution structures of YPMa, which show that the protein has a jelly-roll fold. The closest structural neighbors to YPMa are viral capsid proteins and members of the tumor necrosis factor superfamily. In the crystal structure, YPMa packs as a trimer, another feature shared with viral capsid proteins and TNF superfamily proteins. However, in solution YPMa behaves as a monomer, and any functional relevance of the trimer observed in the crystals is yet to be established.
Superantigens are a class of microbial proteins with the ability to excessively activate T cells by binding to the T cell receptor. The staphylococcal and streptococcal superantigens are closely related in structure and possess an N-terminal domain that resembles an OB fold and a C-terminal domain similar to a beta-grasp fold. Yersinia pseudotuberculosis produces superantigens, YPMa, YPMb, and YPMc, which have no significant amino acid similarity to other proteins. We have determined the crystal and solution structures of YPMa, which show that the protein has a jelly-roll fold. The closest structural neighbors to YPMa are viral capsid proteins and members of the tumor necrosis factor superfamily. In the crystal structure, YPMa packs as a trimer, another feature shared with viral capsid proteins and TNF superfamily proteins. However, in solution YPMa behaves as a monomer, and any functional relevance of the trimer observed in the crystals is yet to be established.
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==About this Structure==
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Crystal and solution structures of a superantigen from Yersinia pseudotuberculosis reveal a jelly-roll fold.,Donadini R, Liew CW, Kwan AH, Mackay JP, Fields BA Structure. 2004 Jan;12(1):145-56. PMID:14725774<ref>PMID:14725774</ref>
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1POQ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Yersinia_pseudotuberculosis Yersinia pseudotuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1POQ OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Crystal and solution structures of a superantigen from Yersinia pseudotuberculosis reveal a jelly-roll fold., Donadini R, Liew CW, Kwan AH, Mackay JP, Fields BA, Structure. 2004 Jan;12(1):145-56. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14725774 14725774]
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</div>
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[[Category: Single protein]]
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<div class="pdbe-citations 1poq" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Yersinia pseudotuberculosis]]
[[Category: Yersinia pseudotuberculosis]]
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[[Category: Donadini, R.]]
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[[Category: Donadini R]]
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[[Category: Fields, B A.]]
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[[Category: Fields BA]]
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[[Category: Kwan, A H.]]
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[[Category: Kwan AH]]
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[[Category: Liew, C W.]]
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[[Category: Liew CW]]
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[[Category: Mackay, J P.]]
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[[Category: Mackay JP]]
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[[Category: jelly roll fold]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 23:02:29 2008''
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Current revision

Solution Structure of a Superantigen from Yersinia pseudotuberculosis

PDB ID 1poq

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