5gso

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'''Unreleased structure'''
 
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The entry 5gso is ON HOLD until Paper Publication
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==Crystal Structures of EV71 3C Protease in complex with NK-1.8k==
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<StructureSection load='5gso' size='340' side='right'caption='[[5gso]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5gso]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterovirus_A71 Enterovirus A71]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GSO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5GSO FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5GI:~{N}-[(2~{S})-3-(4-fluorophenyl)-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepiperidin-3-yl]propan-2-yl]amino]propan-2-yl]-5-methyl-1,2-oxazole-3-carboxamide'>5GI</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5gso FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gso OCA], [https://pdbe.org/5gso PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5gso RCSB], [https://www.ebi.ac.uk/pdbsum/5gso PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5gso ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/E7E815_HE71 E7E815_HE71]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Hand-foot-and-mouth disease (HFMD), caused by enterovirus, is a threat to public health worldwide. To date, enterovirus 71 (EV71) has been one of the major causative agents of HFMD in the Pacific-Asia region, and outbreaks with EV71 cause millions of infections. However, no drug is currently available for clinical therapeutics. In our previous works, we developed a set of protease inhibitors (PIs) targeting the EV71 3C protease (3Cpro). Among these are NK-1.8k and NK-1.9k, which have various active groups and high potencies and selectivities. In the study described here, we determined the structures of the PI NK-1.8k in complex with wild-type (WT) and drug-resistant EV71 3Cpro Comparison of these structures with the structure of unliganded EV71 3Cpro and its complex with AG7088 indicated that the mutation of N69 to a serine residue destabilized the S2 pocket. Thus, the mutation influenced the cleavage activity of EV71 3Cpro and the inhibitory activity of NK-1.8k in an in vitro protease assay and highlighted that site 69 is an additional key site for PI design. More information for the optimization of the P1' to P4 groups of PIs was also obtained from these structures. Together with the results of our previous works, these in-depth results elucidate the inhibitory mechanism of PIs and shed light to develop PIs for the clinical treatment of infections caused by EV71 and other enteroviruses.
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Authors: Wang, Y.X.
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Structure of the Enterovirus 71 3C Protease in Complex with NK-1.8k and Indications for the Development of Antienterovirus Protease Inhibitor.,Wang Y, Cao L, Zhai Y, Yin Z, Sun Y, Shang L Antimicrob Agents Chemother. 2017 Jun 27;61(7). pii: e00298-17. doi:, 10.1128/AAC.00298-17. Print 2017 Jul. PMID:28461310<ref>PMID:28461310</ref>
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Description: Crystal Structures of EV71 3C Protease in complex with NK-1.8k
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Wang, Y.X]]
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<div class="pdbe-citations 5gso" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Virus protease 3D structures|Virus protease 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Enterovirus A71]]
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[[Category: Large Structures]]
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[[Category: Wang Y]]

Current revision

Crystal Structures of EV71 3C Protease in complex with NK-1.8k

PDB ID 5gso

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