1puj

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[[Image:1puj.gif|left|200px]]
 
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{{Structure
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==Structure of B. subtilis YlqF GTPase==
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|PDB= 1puj |SIZE=350|CAPTION= <scene name='initialview01'>1puj</scene>, resolution 2.00&Aring;
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<StructureSection load='1puj' size='340' side='right'caption='[[1puj]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=GNP:PHOSPHOAMINOPHOSPHONIC+ACID-GUANYLATE+ESTER'>GNP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>
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<table><tr><td colspan='2'>[[1puj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PUJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PUJ FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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|GENE= YLQF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GNP:PHOSPHOAMINOPHOSPHONIC+ACID-GUANYLATE+ESTER'>GNP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK09563 rbgA], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK04213 PRK04213], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01856 YlqF]</span>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1puj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1puj OCA], [https://pdbe.org/1puj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1puj RCSB], [https://www.ebi.ac.uk/pdbsum/1puj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1puj ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1puj TOPSAN]</span></td></tr>
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|RELATEDENTRY=
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</table>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1puj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1puj OCA], [http://www.ebi.ac.uk/pdbsum/1puj PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1puj RCSB]</span>
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== Function ==
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}}
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[https://www.uniprot.org/uniprot/RBGA_BACSU RBGA_BACSU] Essential protein that is required for a late step of 50S ribosomal subunit assembly. Has GTPase activity that is stimulated by interaction with the immature 50S ribosome subunit. Binds to the 23S rRNA. Required for the association of ribosomal proteins RplP and RpmA with the large subunit.<ref>PMID:16997968</ref> <ref>PMID:16431913</ref> <ref>PMID:16390447</ref> <ref>PMID:17613524</ref>
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== Evolutionary Conservation ==
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'''Structure of B. subtilis YlqF GTPase'''
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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==About this Structure==
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pu/1puj_consurf.spt"</scriptWhenChecked>
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1PUJ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PUJ OCA].
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1puj ConSurf].
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<div style="clear:both"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Buglino, J.]]
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[[Category: Buglino J]]
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[[Category: Burley, S K.]]
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[[Category: Burley SK]]
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[[Category: Kniewel, R.]]
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[[Category: Kniewel R]]
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[[Category: Lima, C D.]]
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[[Category: Lima CD]]
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[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
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[[Category: gtpase]]
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[[Category: new york structural genomix research consortium]]
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[[Category: nysgxrc t18]]
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[[Category: protein structure initiative]]
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[[Category: psi]]
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[[Category: structural genomic]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 23:04:44 2008''
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Current revision

Structure of B. subtilis YlqF GTPase

PDB ID 1puj

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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