5td4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:58, 4 October 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Starch binding sites on the Human pancreatic alpha amylase D300N variant complexed with an octaose substrate.==
==Starch binding sites on the Human pancreatic alpha amylase D300N variant complexed with an octaose substrate.==
-
<StructureSection load='5td4' size='340' side='right' caption='[[5td4]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
+
<StructureSection load='5td4' size='340' side='right'caption='[[5td4]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5td4]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TD4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5TD4 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5td4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TD4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5TD4 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CEY:ALPHA-D-GLUCOPYRANOSYL-(1- 4)-ALPHA-D-GLUCOPYRANOSYL-(1- 4)-ALPHA-D-GLUCOPYRANOSYL-(1- 4)-ALPHA-D-GLUCOPYRANOSYL-(1- 4)-ALPHA-D-GLUCOPYRANOSYL-(1- 4)-ALPHA-D-GLUCOPYRANOSE'>CEY</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MAL:MALTOSE'>MAL</scene>, <scene name='pdbligand=MTT:MALTOTETRAOSE'>MTT</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene>, <scene name='pdbligand=PRD_900001:alpha-maltose'>PRD_900001</scene>, <scene name='pdbligand=PRD_900010:alpha-maltotetraose'>PRD_900010</scene>, <scene name='pdbligand=PRD_900035:alpha-maltohexaose'>PRD_900035</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4x9y|4x9y]], [[1cpu|1cpu]], [[4w93|4w93]], [[5kez|5kez]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5td4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5td4 OCA], [https://pdbe.org/5td4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5td4 RCSB], [https://www.ebi.ac.uk/pdbsum/5td4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5td4 ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alpha-amylase Alpha-amylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.1 3.2.1.1] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5td4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5td4 OCA], [http://pdbe.org/5td4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5td4 RCSB], [http://www.ebi.ac.uk/pdbsum/5td4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5td4 ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/AMYP_HUMAN AMYP_HUMAN]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 5td4" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5td4" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Amylase 3D structures|Amylase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Alpha-amylase]]
+
[[Category: Homo sapiens]]
-
[[Category: Brayer, G D]]
+
[[Category: Large Structures]]
-
[[Category: Caner, S]]
+
[[Category: Brayer GD]]
-
[[Category: Amylase]]
+
[[Category: Caner S]]
-
[[Category: Diabetes]]
+
-
[[Category: Glucosyl hydrolase]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Obesity]]
+

Current revision

Starch binding sites on the Human pancreatic alpha amylase D300N variant complexed with an octaose substrate.

PDB ID 5td4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools