5gop

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==Crystal structure of alkaline invertase InvA from Anabaena sp. PCC 7120 complexed with sucrose==
==Crystal structure of alkaline invertase InvA from Anabaena sp. PCC 7120 complexed with sucrose==
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<StructureSection load='5gop' size='340' side='right' caption='[[5gop]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
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<StructureSection load='5gop' size='340' side='right'caption='[[5gop]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5gop]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GOP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5GOP FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5gop]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Nostoc_sp._PCC_7120_=_FACHB-418 Nostoc sp. PCC 7120 = FACHB-418]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GOP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5GOP FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=SUC:SUCROSE'>SUC</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.35&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PRD_900003:sucrose'>PRD_900003</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5goo|5goo]], [[5goq|5goq]], [[5gor|5gor]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5gop FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gop OCA], [https://pdbe.org/5gop PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5gop RCSB], [https://www.ebi.ac.uk/pdbsum/5gop PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5gop ProSAT]</span></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-fructofuranosidase Beta-fructofuranosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.26 3.2.1.26] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5gop FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gop OCA], [http://pdbe.org/5gop PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5gop RCSB], [http://www.ebi.ac.uk/pdbsum/5gop PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5gop ProSAT]</span></td></tr>
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</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q8YWS9_NOSS1 Q8YWS9_NOSS1]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Invertases catalyze the hydrolysis of sucrose to glucose and fructose, thereby playing a key role in primary metabolism and plant development. According to the optimum pH, invertases are classified into acid invertases (Ac-Invs) and alkaline/neutral invertases (A/N-Invs), which share no sequence homology. Compared with Ac-Invs that have been extensively studied, the structure and catalytic mechanism of A/N-Invs remain unknown. Here we report the crystal structures of Anabaena alkaline invertase InvA, which was proposed to be the ancestor of modern plant A/N-Invs. These structures are the first in the GH100 family. InvA exists as a hexamer in both crystal and solution. Each subunit consists of an (alpha/alpha)6 barrel core structure in addition to an insertion of three helices. A couple of structures in complex with the substrate or products enabled us to assign the subsites -1 and +1 specifically binding glucose and fructose, respectively. Structural comparison combined with enzymatic assays indicated that Asp-188 and Glu-414 are putative catalytic residues. Further analysis of the substrate binding pocket demonstrated that InvA possesses a stringent substrate specificity toward the alpha1,2-glycosidic bond of sucrose. Together, we suggest that InvA and homologs represent a novel family of glucosidases.
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Structural Analysis of the Catalytic Mechanism and Substrate Specificity of Anabaena Alkaline Invertase InvA Reveals a Novel Glucosidase.,Xie J, Cai K, Hu HX, Jiang YL, Yang F, Hu PF, Cao DD, Li WF, Chen Y, Zhou CZ J Biol Chem. 2016 Dec 2;291(49):25667-25677. Epub 2016 Oct 24. PMID:27777307<ref>PMID:27777307</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 5gop" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Invertase|Invertase]]
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Beta-fructofuranosidase]]
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[[Category: Large Structures]]
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[[Category: Cai, K]]
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[[Category: Nostoc sp. PCC 7120 = FACHB-418]]
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[[Category: Chen, Y]]
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[[Category: Cai K]]
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[[Category: Hu, H X]]
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[[Category: Chen Y]]
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[[Category: Hu, P F]]
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[[Category: Hu HX]]
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[[Category: Jiang, Y L]]
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[[Category: Hu PF]]
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[[Category: Xie, J]]
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[[Category: Jiang YL]]
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[[Category: Yang, F]]
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[[Category: Xie J]]
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[[Category: Zhou, C Z]]
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[[Category: Yang F]]
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[[Category: Alkaline invertase]]
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[[Category: Zhou CZ]]
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[[Category: Cyanobacteria]]
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[[Category: Glycoside hydrolase family 100]]
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[[Category: Hydrolase]]
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[[Category: Sucrose hydrolysis]]
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Current revision

Crystal structure of alkaline invertase InvA from Anabaena sp. PCC 7120 complexed with sucrose

PDB ID 5gop

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