User:Matthew J Lowry/Sandbox 1

From Proteopedia

< User:Matthew J Lowry(Difference between revisions)
Jump to: navigation, search
Current revision (23:06, 5 December 2016) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 3: Line 3:
== Function ==
== Function ==
-
Montelukast is a cysteinyl leukotriene receptor antagonist that blocks production of leukotrienes and prevents them from binding to their receptors. Leukotrienes often cause many pulmonary dysfunctions and inflammatory illnesses such as asthma, peptic ulcers, and ischemia or reperfusion <ref name=“one”>Bentli, R., Ciftci, O., Cetin, A., and Otlu, A. (2016) Anti-inflammatory Montelukast prevents toxic effects of 2,3,7,8-tetrachlorodibenzo-p-dioxin: Oxidative stress, histological alterations in liver, and serum cytokine levels. Toxicology and Industrial Health, 32(5), 769-776. doi: 10.1177/0748233713505894</ref>. Montelukast is known for its effectiveness in the pathophysiological mechanisms of asthma and asthma associated allergic rhinitis<ref name=“two”>Cylllyl, A., Kara, A., O­zdemir, T., Ogus, C. , and Gulkesen K. (2003) Effects of oral montelukast on airway function in acute asthma. Respiratory Medicine, 97(5), 533-536. doi: 10.1053/rmed.2003.1479</ref>. Montelukast suppresses the activation of eosinophils, which are associated with increased asthma severity. It specifically targets and blocks the leukotriene cascade that is responsible for bronchoconstriction and sensory activation in the inflammatory pathway of asthma. Allergic rhinitis is often associated with asthma, this can lead to leukotrienes in the upper airway that act as inflammatory mediators producing the symptoms of allergic rhinitis <ref name="three">Nayak, A. (2004). A review of montelukast in the treatment of asthma and allergic rhinitis. Expert Opinion on Pharmacotherapy, 5:3, 679-686. doi:10.1517/14656566.5.3.679</ref>. Montelukast reduces the release of inflammatory cytokines from airway cells and concentration of exhaled nitric oxide, alleviating allergic symptoms by decreasing airway hyperresponsiveness and bronchoconstriction. Due to its efficacy and safety, it can work as a monotherapy for those who do not respond well to inhaled corticosteroids, but it can also be prescribed with other drugs such as inhaled or oral corticosteroids, antihistamines, and beta-2 agonists to maximize its effects<ref name=“four”>Paggiaro, P., Bacci, E. (2011) Montelukast in Asthma: A Review of its Efficacy and Place in Therapy. Therapeutic Advances in Chronic Disease, 2(1), 47-58. doi: 10.1177/ 2040622310383343</ref>.
+
Montelukast is a cysteinyl leukotriene receptor antagonist that blocks the production of leukotrienes and prevents them from binding to their receptors. Leukotrienes often cause many pulmonary dysfunctions and inflammatory illnesses such as asthma, peptic ulcers, and ischemia or reperfusion <ref name=“one”>Bentli, R., Ciftci, O., Cetin, A., and Otlu, A. (2016) Anti-inflammatory Montelukast prevents toxic effects of 2,3,7,8-tetrachlorodibenzo-p-dioxin: Oxidative stress, histological alterations in liver, and serum cytokine levels. Toxicology and Industrial Health, 32(5), 769-776. doi: 10.1177/0748233713505894</ref>. Montelukast is known for its effectiveness in the pathophysiological mechanisms of asthma and asthma associated allergic rhinitis<ref name=“two”>Cylllyl, A., Kara, A., O­zdemir, T., Ogus, C. , and Gulkesen K. (2003) Effects of oral montelukast on airway function in acute asthma. Respiratory Medicine, 97(5), 533-536. doi: 10.1053/rmed.2003.1479</ref>. Montelukast suppresses the activation of eosinophils, which are associated with increased asthma severity. It specifically targets and blocks the leukotriene cascade that is responsible for bronchoconstriction and sensory activation in the inflammatory pathway of asthma. Allergic rhinitis is often associated with asthma, this can lead to leukotrienes in the upper airway that act as inflammatory mediators producing the symptoms of rhinitis <ref name="three">Nayak, A. (2004). A review of montelukast in the treatment of asthma and allergic rhinitis. Expert Opinion on Pharmacotherapy, 5:3, 679-686. doi:10.1517/14656566.5.3.679</ref>. Montelukast reduces the release of inflammatory cytokines from airway cells and concentration of exhaled nitric oxide, alleviating allergic symptoms by decreasing airway hyperresponsiveness and bronchoconstriction. Due to its efficacy and safety, it can work as a monotherapy for those who do not respond well to inhaled corticosteroids, but it can also be prescribed with other drugs such as inhaled or oral corticosteroids, antihistamines, and beta-2 agonists to maximize its effects<ref name=“four”>Paggiaro, P., Bacci, E. (2011) Montelukast in Asthma: A Review of its Efficacy and Place in Therapy. Therapeutic Advances in Chronic Disease, 2(1), 47-58. doi: 10.1177/ 2040622310383343</ref>.
== Structural Highlights ==
== Structural Highlights ==
-
<scene name='74/745011/Montelukast_alone/1'>Montelukast</scene> has the chemical formula of C<sub>35</sub>H<sub>36</sub>ClNO<sub>3</sub>S with a molecular weight of 586.187 Da <ref name="five">https://www3.rcsb.org/ligand/MTK</ref>. The primary target for Montelukast is Cysteinyl Leukotriene Receptor 1 (CysLTR1) which contains 337 amino acids with a molecular weight of 38,541 Da <ref name="six">http://www.uniprot.org/uniprot/Q9Y271#sequences</ref>. It has 4 extracellular domains, 4 cytoplasmic domains, and 7 helical transmembrane domains <ref name="seven">http://www.rcsb.org/pdb/protein/Q9Y271</ref>. Because no three-dimensional model was found for this protein on the PDB, Bandaru, S., et al used a multitude of programs to predict the structure of the protein <ref name="eight">Bandaru, S., Marri, V. K., Kasera, P., Kovuri, P., Girdhar, A., Mittal, D. R., . . . Nayarisseri, A. (2014). Structure based virtual screening of ligands to identify cysteinyl leukotriene receptor 1 antagonist. Bioinformation, 10(10), 652-657. doi:10.6026/97320630010652</ref>. [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4248348/figure/F1/ Figure 1] of their paper provides an image of their prediction. Though this provides a model for the CysLTR1 protein there is still no model for the complexing of Montelukast with its target protein.
+
<scene name='74/745011/Montelukast_alone/3'>Montelukast</scene> has the chemical formula of C<sub>35</sub>H<sub>36</sub>ClNO<sub>3</sub>S with a molecular weight of 586.187 Da <ref name="five">https://www3.rcsb.org/ligand/MTK</ref>. The primary target for Montelukast is Cysteinyl Leukotriene Receptor 1 (CysLTR1) which contains 337 amino acids with a molecular weight of 38,541 Da <ref name="six">http://www.uniprot.org/uniprot/Q9Y271#sequences</ref>. It has 4 extracellular domains, 4 cytoplasmic domains, and 7 helical transmembrane domains <ref name="seven">http://www.rcsb.org/pdb/protein/Q9Y271</ref>. Because no three-dimensional model was found for this protein on the PDB, Bandaru, S., et al used a multitude of programs to predict the structure of the protein <ref name="eight">Bandaru, S., Marri, V. K., Kasera, P., Kovuri, P., Girdhar, A., Mittal, D. R., . . . Nayarisseri, A. (2014). Structure based virtual screening of ligands to identify cysteinyl leukotriene receptor 1 antagonist. Bioinformation, 10(10), 652-657. doi:10.6026/97320630010652</ref>. [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4248348/figure/F1/ Figure 1] of their paper provides an image of their prediction. Though this provides a model for the CysLTR1 protein there is still no model for the complexing of Montelukast with its target protein.
-
Montelukast, like any drug, can also bind to non-target proteins. One of these proteins is Cytochrome P450 2C8 (CYP2C8)(<scene name='74/745011/Initial/1'>2NNI</scene>). This protein is made of 490 amino acids and has a molecular weight of 55,825 Da <ref name="nine">http://www.uniprot.org/uniprot/P10632#sequences</ref>. The peptide chain of Cytochrome P450 2C8 consists of 51% alpha helices and 9% beta sheets<ref name="ten">Kabsch, W., & Sander, C. (1983, December). Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22(12), 2577-2637. doi:10.1002/bip.360221211</ref>. The structure was determined using the method of X-ray diffraction with a resolution of 2.8 Angstroms<ref name="eleven"> http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nni</ref>. Montelukast (<scene name='74/745011/Initial/3'>MTK</scene>) is held in place in the active site of CYP2C8 by hydrogen bonds between the side chain of Ser100 and the oxygens carboxyl group of Montelukast (resonance allows H-bond to either oxygens), and Val296 and the tertiary alcohol in Montelukast<ref name="twelve">http://cdn.rcsb.org//poseview/NN/2NNI/MTK/2NNI_MTK.png</ref>. Ser100 and Val296 are indicated in pink Residue Thr107 helps stabilize the polarity induced by the Chlorine <ref name="twelve"/>. Hydrophobic interactions from amino acids like Alanine, Isoleucine, and Phenylalanine throughout the active site also help stabilize the interaction <ref name="twelve"/>. The binding pocket can be three-dimensionally visualized using [http://www.rcsb.org/pdb/explore/jmol.do?structureId=2NNI&residueNr=MTK JSmol].
+
Montelukast, like any drug, can also bind to non-target proteins. One of these proteins is Cytochrome P450 2C8 (CYP2C8)(<scene name='74/745011/Initial/1'>2NNI</scene>). This protein is made of 490 amino acids and has a molecular weight of 55,825 Da <ref name="nine">http://www.uniprot.org/uniprot/P10632#sequences</ref>. The peptide chain of Cytochrome P450 2C8 consists of 51% alpha helices and 9% beta sheets<ref name="ten">Kabsch, W., & Sander, C. (1983, December). Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22(12), 2577-2637. doi:10.1002/bip.360221211</ref>. The structure was determined using the method of X-ray diffraction with a resolution of 2.8 Angstroms<ref name="eleven"> http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nni</ref>. Montelukast is held in place in the active site of CYP2C8 by hydrogen bonds between the side chain of Ser100 and the oxygens carboxyl group of Montelukast (resonance allows H-bond to either oxygens), and Val296 and the tertiary alcohol in Montelukast<ref name="twelve">http://cdn.rcsb.org//poseview/NN/2NNI/MTK/2NNI_MTK.png</ref>. <scene name='74/745011/Initial/5'>Ser100 and Val296</scene> are indicated in pink. Residue Thr107 helps stabilize the polarity induced by the Chlorine <ref name="twelve"/>. Hydrophobic interactions from amino acids like Alanine, Isoleucine, and Phenylalanine throughout the active site also help stabilize the interaction <ref name="twelve"/>. The binding pocket can be three-dimensionally visualized using [http://www.rcsb.org/pdb/explore/jmol.do?structureId=2NNI&residueNr=MTK JSmol].
== Mechanism ==
== Mechanism ==
Line 14: Line 14:
===5-lipoxygenase Pathway===
===5-lipoxygenase Pathway===
-
All leukotrienes involved in the 5-lipoxygenase pathway are synthesized from the fatty acid arachidonic acid<ref name="fourteen">Drazen, J., Elliot, I., & O’Byrne, P. (1999). Treatment of Asthma with Drugs Modifying the Leukotriene Pathway. The New England Journal of Medicine, 340, 197-206. doi:10.1056/NEJM199901213400306</ref>; this acid is converted into the intermediate 5-hydroperoxyeicosatetraenioc acid (5-HPETE) by 5-lipoxygenase, and then 5-lipoxygenase quickly converts this into leukotriene A4 (LTA4) <ref name="fifteen">Wenzel, S.E. (1997). Arachidonic Acid Metabolites: Mediators of Inflammation in Asthma. Pharmacotherapy, 17, 3S-12S. doi:10.1002/j.1875-9114.1997tbo3696.x</ref>. LTA4 is a very unstable leukotriene and quickly follows one of two pathways: either its epoxide hydrolase catalyzes the conversion of LTA4 into LTB4, or LTC4 synthase converts it into LTC4 <ref name="fifteen"/>. Each of these leukotrienes precedes their own pathway with LTC4 continuing the cascade to produce subsequent leukotrienes D4 and E4.
+
All leukotrienes involved in the 5-lipoxygenase pathway are synthesized from the fatty acid arachidonic acid<ref name="fourteen">Drazen, J., Elliot, I., & O’Byrne, P. (1999). Treatment of Asthma with Drugs Modifying the Leukotriene Pathway. The New England Journal of Medicine, 340, 197-206. doi:10.1056/NEJM199901213400306</ref>; this acid is converted into the intermediate 5-hydroperoxyeicosatetraenioc acid (5-HPETE) by 5-lipoxygenase, and then 5-lipoxygenase quickly converts this into leukotriene A<sub>4</sub> (LTA<sub>4</sub>) <ref name="fifteen">Wenzel, S.E. (1997). Arachidonic Acid Metabolites: Mediators of Inflammation in Asthma. Pharmacotherapy, 17, 3S-12S. doi:10.1002/j.1875-9114.1997tbo3696.x</ref>. LTA<sub>4</sub> is a very unstable leukotriene and quickly follows one of two pathways: either its epoxide hydrolase catalyzes the conversion of LTA<sub>4</sub> into LTB<sub>4</sub>, or LTC<sub>4</sub> synthase converts it into LTC<sub>4</sub> <ref name="fifteen"/>. Each of these leukotrienes precedes their own pathway with LTC<sub>4</sub> continuing the cascade to produce subsequent leukotrienes D<sub>4</sub> and E<sub>4</sub>.
-
Once synthesized in the cytosol of cells within lung tissue, LTC4 is carried by a transmembrane transporter to the extracellular space where it initiates the production of LTD4 and LTE4; leukotrienes C4 and D4 have equal ability to stimulate smooth muscle constriction in the airway, while E4 is not as strong of a muscle constrictor <ref name="fourteen"/>. Each of these leukotrienes can bind to a CysLT receptor producing symptoms associated with asthma and also leading to increased edema formation, mucus secretion, and a decrease in mucus clearance <ref name="fifteen"/>. Montelukast acts as an antagonist by blocking the leukotrienes from binding at the CysLT receptor therefore, preventing the previously discussed symptoms from occurring; it is easy to think of Montelukast as a key that fits into a lock, but does not turn it.
+
Once synthesized in the cytosol of cells within lung tissue, LTC<sub>4</sub> is carried by a transmembrane transporter to the extracellular space where it initiates the production of LTD<sub>4</sub> and LTE<sub>4</sub>; leukotrienes C<sub>4</sub> and D<sub>4</sub> have equal ability to stimulate smooth muscle constriction in the airway, while E<sub>4</sub> is not as strong of a muscle constrictor <ref name="fourteen"/>. Each of these leukotrienes can bind to a CysLT receptor producing symptoms associated with asthma and also leading to increased edema formation, mucus secretion, and a decrease in mucus clearance <ref name="fifteen"/>. Montelukast acts as an antagonist by blocking the leukotrienes from binding at the CysLT receptor therefore, preventing the previously discussed symptoms from occurring; it is easy to think of Montelukast as a key that fits into a lock, but does not turn it.
-
===LTB4 Pathway===
+
===LTB<sub>4</sub> Pathway===
-
Less information is known about the specifics of how Montelukast may affect the LTB4 pathway; once LTB4 is synthesized from arachidonic acid it is also carried to the extracellular space by a transmembrane transporter; once in the extracellular space it binds to the B leukotriene receptor, known as BLT <ref name="fourteen"/>.This leukotriene is a strong neutrophil-chemo-attracting compound that can cause neutrophilic adhesion, mucus generation, and can aid in increasing inflammation seen during asthma <ref name="fifteen"/>. It is hypothesized that Montelukast may inhibit 5-lipooxygenase in neutrophils, monocytes, and macrophages possibly preventing the production of LTB4 <ref name="sixteen">Tintinger, G., Feldman, C., Theron, A., and Anderson, R. (2010) Montelukast:more than a cysteinyl leukotriene receptor antagonist? The Scientific World Journal, 10, 2403-2413. doi:10.1100/tsw.2010.229.</ref>.This mechanism for Montelukast would also be distinct from the mechanism used in the cascade involving leukotriene’s C4, D4, and E4. It is also thought that the amount of Montelukast needed to prevent production of LTB4 would need to be greater than that needed to prevent the CysLT cascade <ref name="sixteen"/>.
+
Less information is known about the specifics of how Montelukast may affect the LTB<sub>4</sub> pathway; once LTB<sub>4</sub> is synthesized from arachidonic acid it is also carried to the extracellular space by a transmembrane transporter; once in the extracellular space it binds to the B leukotriene receptor, known as BLT <ref name="fourteen"/>.This leukotriene is a strong neutrophil-chemo-attracting compound that can cause neutrophilic adhesion, mucus generation, and can aid in increasing inflammation seen during asthma <ref name="fifteen"/>. It is hypothesized that Montelukast may inhibit 5-lipooxygenase in neutrophils, monocytes, and macrophages possibly preventing the production of LTB<sub>4</sub> <ref name="sixteen">Tintinger, G., Feldman, C., Theron, A., and Anderson, R. (2010) Montelukast:more than a cysteinyl leukotriene receptor antagonist? The Scientific World Journal, 10, 2403-2413. doi:10.1100/tsw.2010.229.</ref>.This mechanism for Montelukast would also be distinct from the mechanism used in the cascade involving leukotriene’s C<sub>4</sub>, D<sub>4</sub>, and E<sub>4</sub>. It is also thought that the amount of Montelukast needed to prevent production of LTB<sub>4</sub> would need to be greater than that needed to prevent the CysLT cascade <ref name="sixteen"/>.
</StructureSection>
</StructureSection>
== References ==
== References ==
<references/>
<references/>

Current revision

Montelukast

Cytochrome P450 2C8 in Humans complexed with Montelukast.

Drag the structure with the mouse to rotate

References

  1. Bentli, R., Ciftci, O., Cetin, A., and Otlu, A. (2016) Anti-inflammatory Montelukast prevents toxic effects of 2,3,7,8-tetrachlorodibenzo-p-dioxin: Oxidative stress, histological alterations in liver, and serum cytokine levels. Toxicology and Industrial Health, 32(5), 769-776. doi: 10.1177/0748233713505894
  2. Cylllyl, A., Kara, A., O­zdemir, T., Ogus, C. , and Gulkesen K. (2003) Effects of oral montelukast on airway function in acute asthma. Respiratory Medicine, 97(5), 533-536. doi: 10.1053/rmed.2003.1479
  3. 3.0 3.1 Nayak, A. (2004). A review of montelukast in the treatment of asthma and allergic rhinitis. Expert Opinion on Pharmacotherapy, 5:3, 679-686. doi:10.1517/14656566.5.3.679
  4. Paggiaro, P., Bacci, E. (2011) Montelukast in Asthma: A Review of its Efficacy and Place in Therapy. Therapeutic Advances in Chronic Disease, 2(1), 47-58. doi: 10.1177/ 2040622310383343
  5. https://www3.rcsb.org/ligand/MTK
  6. http://www.uniprot.org/uniprot/Q9Y271#sequences
  7. http://www.rcsb.org/pdb/protein/Q9Y271
  8. Bandaru, S., Marri, V. K., Kasera, P., Kovuri, P., Girdhar, A., Mittal, D. R., . . . Nayarisseri, A. (2014). Structure based virtual screening of ligands to identify cysteinyl leukotriene receptor 1 antagonist. Bioinformation, 10(10), 652-657. doi:10.6026/97320630010652
  9. http://www.uniprot.org/uniprot/P10632#sequences
  10. Kabsch, W., & Sander, C. (1983, December). Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22(12), 2577-2637. doi:10.1002/bip.360221211
  11. http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nni
  12. 12.0 12.1 12.2 2NNI_MTK.png
  13. Diamant, Z., Mantzouranis, E., & Bjermer, L. (2009). Montelukast in the treatment of asthma and beyond. Expert Reviews, 5, 639-658. doi:10.1586/eci.09.62
  14. 14.0 14.1 14.2 Drazen, J., Elliot, I., & O’Byrne, P. (1999). Treatment of Asthma with Drugs Modifying the Leukotriene Pathway. The New England Journal of Medicine, 340, 197-206. doi:10.1056/NEJM199901213400306
  15. 15.0 15.1 15.2 15.3 Wenzel, S.E. (1997). Arachidonic Acid Metabolites: Mediators of Inflammation in Asthma. Pharmacotherapy, 17, 3S-12S. doi:10.1002/j.1875-9114.1997tbo3696.x
  16. 16.0 16.1 Tintinger, G., Feldman, C., Theron, A., and Anderson, R. (2010) Montelukast:more than a cysteinyl leukotriene receptor antagonist? The Scientific World Journal, 10, 2403-2413. doi:10.1100/tsw.2010.229.

Proteopedia Page Contributors and Editors (what is this?)

Matthew J Lowry

Personal tools