5thp

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'''Unreleased structure'''
 
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The entry 5thp is ON HOLD until Sep 30 2018
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==Rhodocetin in complex with the integrin alpha2-A domain==
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<StructureSection load='5thp' size='340' side='right'caption='[[5thp]], [[Resolution|resolution]] 3.01&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5thp]] is a 18 chain structure with sequence from [https://en.wikipedia.org/wiki/Calloselasma_rhodostoma Calloselasma rhodostoma] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5THP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5THP FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.006&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5thp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5thp OCA], [https://pdbe.org/5thp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5thp RCSB], [https://www.ebi.ac.uk/pdbsum/5thp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5thp ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/SLEC_CALRH SLEC_CALRH] Potent inhibitor of collagen-induced platelet aggregation. It acts by binding to the integrin alpha2A domain and blocks collagen binding to integrin alpha-2/beta-1 (ITGA2/ITGB1). The gamma/delta subunits mainly contribute to this activity.<ref>PMID:11121411</ref> <ref>PMID:12871211</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The collagen binding integrin alpha2beta1 plays a crucial role in hemostasis, fibrosis, and cancer progression amongst others. It is specifically inhibited by rhodocetin (RC), a C-type lectin-related protein (CLRP) found in Malayan pit viper (Calloselasma rhodostoma) venom. The structure of RC alone reveals a heterotetramer arranged as an alphabeta and gammadelta subunit in a cruciform shape. RC specifically binds to the collagen binding A-domain of the integrin alpha2 subunit, thereby blocking collagen-induced platelet aggregation. However, until now, the molecular basis for this interaction has remained unclear. Here, we present the molecular structure of the RCgammadelta-alpha2A complex solved to 3.0 A resolution. Our findings show that RC undergoes a dramatic structural reorganization upon binding to alpha2beta1 integrin. Besides the release of the nonbinding RCalphabeta tandem, the RCgamma subunit interacts with loop 2 of the alpha2A domain as result of a dramatic conformational change. The RCdelta subunit contacts the integrin alpha2A domain in the "closed" conformation through its helix C. Combined with epitope-mapped antibodies, conformationally locked alpha2A domain mutants, point mutations within the alpha2A loop 2, and chemical modifications of the purified toxin protein, this molecular structure of RCgammadelta-alpha2A complex explains the inhibitory mechanism and specificity of RC for alpha2beta1 integrin.
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Authors:
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Dramatic and concerted conformational changes enable rhodocetin to block alpha2beta1 integrin selectively.,Eble JA, McDougall M, Orriss GL, Niland S, Johanningmeier B, Pohlentz G, Meier M, Karrasch S, Estevao-Costa MI, Martins Lima A, Stetefeld J PLoS Biol. 2017 Jul 13;15(7):e2001492. doi: 10.1371/journal.pbio.2001492., eCollection 2017 Jul. PMID:28704364<ref>PMID:28704364</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 5thp" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Integrin 3D structures|Integrin 3D structures]]
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*[[Rhodocetin|Rhodocetin]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Calloselasma rhodostoma]]
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: McDougall M]]
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[[Category: Orriss GL]]
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[[Category: Stetefeld J]]

Current revision

Rhodocetin in complex with the integrin alpha2-A domain

PDB ID 5thp

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