We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

5h5s

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "5h5s" [edit=sysop:move=sysop])
Current revision (07:24, 9 August 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of human GPX4 in complex with GXpep-3==
==Crystal structure of human GPX4 in complex with GXpep-3==
-
<StructureSection load='5h5s' size='340' side='right' caption='[[5h5s]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
+
<StructureSection load='5h5s' size='340' side='right'caption='[[5h5s]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5h5s]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5H5S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5H5S FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5h5s]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_phage_T7 Escherichia phage T7] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5H5S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5H5S FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5h5q|5h5q]], [[5h5r|5h5r]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5h5s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5h5s OCA], [https://pdbe.org/5h5s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5h5s RCSB], [https://www.ebi.ac.uk/pdbsum/5h5s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5h5s ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phospholipid-hydroperoxide_glutathione_peroxidase Phospholipid-hydroperoxide glutathione peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.12 1.11.1.12] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5h5s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5h5s OCA], [http://pdbe.org/5h5s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5h5s RCSB], [http://www.ebi.ac.uk/pdbsum/5h5s PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5h5s ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/GPX4_HUMAN GPX4_HUMAN]] Protects cells against membrane lipid peroxidation and cell death. Required for normal sperm development and male fertility. Could play a major role in protecting mammals from the toxicity of ingested lipid hydroperoxides. Essential for embryonic development. Protects from radiation and oxidative damage (By similarity).
+
[https://www.uniprot.org/uniprot/GPX4_HUMAN GPX4_HUMAN] Protects cells against membrane lipid peroxidation and cell death. Required for normal sperm development and male fertility. Could play a major role in protecting mammals from the toxicity of ingested lipid hydroperoxides. Essential for embryonic development. Protects from radiation and oxidative damage (By similarity).
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 19:
</div>
</div>
<div class="pdbe-citations 5h5s" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5h5s" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Glutathione peroxidase|Glutathione peroxidase]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Phospholipid-hydroperoxide glutathione peroxidase]]
+
[[Category: Escherichia phage T7]]
-
[[Category: Kadotani, A]]
+
[[Category: Homo sapiens]]
-
[[Category: Lane, W]]
+
[[Category: Large Structures]]
-
[[Category: Snell, G]]
+
[[Category: Kadotani A]]
-
[[Category: Sogabe, S]]
+
[[Category: Lane W]]
-
[[Category: Oxidoreductase]]
+
[[Category: Snell G]]
-
[[Category: Oxidoreductase-oxidoreductase inhibitor complex]]
+
[[Category: Sogabe S]]
-
[[Category: Phospholipid hydroperoxide glutathione peroxidase 4]]
+
-
[[Category: Selenocysteine]]
+

Current revision

Crystal structure of human GPX4 in complex with GXpep-3

PDB ID 5h5s

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5h5s"
Personal tools