5ixf

From Proteopedia

(Difference between revisions)

Current revision

Solution structure of the STAM2 SH3 with AMSH derived peptide complex

Structural highlights

5ixf is a 2 chain structure with sequence from Homo sapiens. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	Solution NMR
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

STAM2_HUMAN Involved in intracellular signal transduction mediated by cytokines and growth factors. Upon IL-2 and GM-CSL stimulation, it plays a role in signaling leading to DNA synthesis and MYC induction. May also play a role in T-cell development. Involved in down-regulation of receptor tyrosine kinase via multivesicular body (MVBs) when complexed with HGS (ESCRT-0 complex). The ESCRT-0 complex binds ubiquitin and acts as sorting machinery that recognizes ubiquitinated receptors and transfers them to further sequential lysosomal sorting/trafficking processes (By similarity).

Publication Abstract from PubMed

AMSH [associated molecule with a Src homology 3 domain of signal transducing adaptor molecule (STAM)] is one of the deubiquitinating enzymes associated in the regulation of endocytic cargo trafficking. It shows an exquisite selectivity for Lys63-linked polyubiquitin chains that are the main chains involved in cargo sorting. The first step requires the ESCRT-0 complex that comprises the STAM and hepatocyte growth factor-regulated substrate (Hrs) proteins. Previous studies have shown that the presence of the STAM protein increases the efficiency of Lys63-linked polyubiquitin chain cleavage by AMSH, one of the deubiquitinating enzyme involved in lysosomal degradation. In the present study, we are seeking to understand if a particular structural organization among these three key players is responsible for the stimulation of the catalytic activity of AMSH. To address this question, we first monitored the interaction between the ubiquitin interacting motif (UIM)-SH3 construct of STAM2 and the Lys63-linked diubiquitin (Lys63-Ub2) chains by means of NMR. We show that Lys63-Ub2 is able to bind either the UIM or the SH3 domain without any selectivity. We further demonstrate that the SH3 binding motif (SBM) of AMSH (AMSH-SBM) outcompetes Lys63-Ub2 for binding SH3. Additionally, we show how different AMSH-SBM variants, modified by their sequence and length, exhibit similar equilibrium dissociation constants when binding SH3 but significantly differ in their dissociation rate constants. Finally, we report the solution NMR structure of the AMSH-SBM/SH3 complex and propose a structural organization where the AMSH-SBM interacts with the STAM2-SH3 domain and contributes to the correct positioning of AMSH prior to polyubiquitin chains' cleavage.

NMR Reveals the Interplay among the AMSH SH3 Binding Motif, STAM2, and Lys63-Linked Diubiquitin.,Hologne M, Cantrelle FX, Riviere G, Guilliere F, Trivelli X, Walker O J Mol Biol. 2016 Nov 6;428(22):4544-4558. doi: 10.1016/j.jmb.2016.10.002. Epub, 2016 Oct 8. PMID:27725184^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Hologne M, Cantrelle FX, Riviere G, Guilliere F, Trivelli X, Walker O. NMR Reveals the Interplay among the AMSH SH3 Binding Motif, STAM2, and Lys63-Linked Diubiquitin. J Mol Biol. 2016 Nov 6;428(22):4544-4558. doi: 10.1016/j.jmb.2016.10.002. Epub, 2016 Oct 8. PMID:27725184 doi:http://dx.doi.org/10.1016/j.jmb.2016.10.002

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5ixf"

@@ Line 1: / Line 1: @@
 ==Solution structure of the STAM2 SH3 with AMSH derived peptide complex==
-<StructureSection load='5ixf' size='340' side='right' caption='[[5ixf]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''>
+<StructureSection load='5ixf' size='340' side='right'caption='[[5ixf]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5ixf]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IXF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5IXF FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5ixf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IXF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5IXF FirstGlance]. <br>
-</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ixf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ixf OCA], [http://pdbe.org/5ixf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ixf RCSB], [http://www.ebi.ac.uk/pdbsum/5ixf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ixf ProSAT]</span></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ixf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ixf OCA], [https://pdbe.org/5ixf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ixf RCSB], [https://www.ebi.ac.uk/pdbsum/5ixf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ixf ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/STAM2_HUMAN STAM2_HUMAN]] Involved in intracellular signal transduction mediated by cytokines and growth factors. Upon IL-2 and GM-CSL stimulation, it plays a role in signaling leading to DNA synthesis and MYC induction. May also play a role in T-cell development. Involved in down-regulation of receptor tyrosine kinase via multivesicular body (MVBs) when complexed with HGS (ESCRT-0 complex). The ESCRT-0 complex binds ubiquitin and acts as sorting machinery that recognizes ubiquitinated receptors and transfers them to further sequential lysosomal sorting/trafficking processes (By similarity).
+[https://www.uniprot.org/uniprot/STAM2_HUMAN STAM2_HUMAN] Involved in intracellular signal transduction mediated by cytokines and growth factors. Upon IL-2 and GM-CSL stimulation, it plays a role in signaling leading to DNA synthesis and MYC induction. May also play a role in T-cell development. Involved in down-regulation of receptor tyrosine kinase via multivesicular body (MVBs) when complexed with HGS (ESCRT-0 complex). The ESCRT-0 complex binds ubiquitin and acts as sorting machinery that recognizes ubiquitinated receptors and transfers them to further sequential lysosomal sorting/trafficking processes (By similarity).
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 21: / Line 22: @@
 __TOC__
 </StructureSection>
-[[Category: Cantrelle, F X]]
+[[Category: Homo sapiens]]
-[[Category: Hologne, M]]
+[[Category: Large Structures]]
-[[Category: Trivelli, X]]
+[[Category: Cantrelle FX]]
-[[Category: Walker, O]]
+[[Category: Hologne M]]
-[[Category: Amsh]]
+[[Category: Trivelli X]]
-[[Category: Endosome]]
+[[Category: Walker O]]
-[[Category: Sh3]]
-[[Category: Signaling protein]]
-[[Category: Stam2]]
-[[Category: Traffic]]

5ixf

From Proteopedia

Current revision

Solution structure of the STAM2 SH3 with AMSH derived peptide complex

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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