This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5t9t

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:56, 4 October 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
==Protocadherin Gamma B2 extracellular cadherin domains 1-5==
==Protocadherin Gamma B2 extracellular cadherin domains 1-5==
-
<StructureSection load='5t9t' size='340' side='right' caption='[[5t9t]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
+
<StructureSection load='5t9t' size='340' side='right'caption='[[5t9t]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5t9t]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5T9T OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5T9T FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5t9t]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5T9T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5T9T FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.5&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5t9t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5t9t OCA], [http://pdbe.org/5t9t PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5t9t RCSB], [http://www.ebi.ac.uk/pdbsum/5t9t PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5t9t ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5t9t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5t9t OCA], [https://pdbe.org/5t9t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5t9t RCSB], [https://www.ebi.ac.uk/pdbsum/5t9t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5t9t ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/Q8K486_MOUSE Q8K486_MOUSE]] Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain.[SAAS:SAAS00348345]
+
[https://www.uniprot.org/uniprot/Q8K486_MOUSE Q8K486_MOUSE] Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain.[SAAS:SAAS00348345]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 18: Line 19:
</div>
</div>
<div class="pdbe-citations 5t9t" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5t9t" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Cadherin 3D structures|Cadherin 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bahna, F]]
+
[[Category: Large Structures]]
-
[[Category: Goodman, K M]]
+
[[Category: Mus musculus]]
-
[[Category: Honig, B]]
+
[[Category: Bahna F]]
-
[[Category: Mannepalli, S]]
+
[[Category: Goodman KM]]
-
[[Category: Shapiro, L]]
+
[[Category: Honig B]]
-
[[Category: Cell adhesion]]
+
[[Category: Mannepalli S]]
 +
[[Category: Shapiro L]]

Current revision

Protocadherin Gamma B2 extracellular cadherin domains 1-5

PDB ID 5t9t

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5t9t"
Personal tools