This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5ep8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:13, 12 July 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==X-Ray Structure of the Complex Pyrimidine-nucleoside phosphorylase from Bacillus subtilis with Sulfate Ion==
==X-Ray Structure of the Complex Pyrimidine-nucleoside phosphorylase from Bacillus subtilis with Sulfate Ion==
-
<StructureSection load='5ep8' size='340' side='right' caption='[[5ep8]], [[Resolution|resolution]] 2.66&Aring;' scene=''>
+
<StructureSection load='5ep8' size='340' side='right'caption='[[5ep8]], [[Resolution|resolution]] 2.66&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5ep8]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EP8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5EP8 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5ep8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EP8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5EP8 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.66&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyrimidine-nucleoside_phosphorylase Pyrimidine-nucleoside phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.2 2.4.2.2] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ep8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ep8 OCA], [http://pdbe.org/5ep8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ep8 RCSB], [http://www.ebi.ac.uk/pdbsum/5ep8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ep8 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ep8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ep8 OCA], [https://pdbe.org/5ep8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ep8 RCSB], [https://www.ebi.ac.uk/pdbsum/5ep8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ep8 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/PDP_BACSU PDP_BACSU]] Catalyzes phosphorolysis of the pyrimidine nucleosides uridine, thymidine and 2'-deoxyuridine with the formation of the corresponding pyrimidine base and ribose-1-phosphate.[UniProtKB:P77836]<ref>PMID:8550462</ref>
+
[https://www.uniprot.org/uniprot/PDP_BACSU PDP_BACSU] Catalyzes phosphorolysis of the pyrimidine nucleosides uridine, thymidine and 2'-deoxyuridine with the formation of the corresponding pyrimidine base and ribose-1-phosphate.[UniProtKB:P77836]<ref>PMID:8550462</ref>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Pyrimidine-nucleoside phosphorylase]]
+
[[Category: Bacillus subtilis subsp. subtilis str. 168]]
-
[[Category: Balaev, V V]]
+
[[Category: Large Structures]]
-
[[Category: Betzel, C]]
+
[[Category: Balaev VV]]
-
[[Category: Gabdoulkhakov, A G]]
+
[[Category: Betzel C]]
-
[[Category: Lashkov, A A]]
+
[[Category: Gabdoulkhakov AG]]
-
[[Category: Mikhailov, A M]]
+
[[Category: Lashkov AA]]
-
[[Category: Np-2 superfamily]]
+
[[Category: Mikhailov AM]]
-
[[Category: Transferase]]
+

Current revision

X-Ray Structure of the Complex Pyrimidine-nucleoside phosphorylase from Bacillus subtilis with Sulfate Ion

PDB ID 5ep8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools