This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5ito

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:09, 30 August 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Structure of the periplasmic binding protein M117N-NocT from A. tumefaciens in complex with octopine==
==Structure of the periplasmic binding protein M117N-NocT from A. tumefaciens in complex with octopine==
-
<StructureSection load='5ito' size='340' side='right' caption='[[5ito]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
+
<StructureSection load='5ito' size='340' side='right'caption='[[5ito]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5ito]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ITO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ITO FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5ito]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ITO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ITO FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=6DB:OCTOPINE'>6DB</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=TOE:2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL'>TOE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.35&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4p0i|4p0i]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=6DB:OCTOPINE'>6DB</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=TOE:2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL'>TOE</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ito FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ito OCA], [http://pdbe.org/5ito PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ito RCSB], [http://www.ebi.ac.uk/pdbsum/5ito PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ito ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ito FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ito OCA], [https://pdbe.org/5ito PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ito RCSB], [https://www.ebi.ac.uk/pdbsum/5ito PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ito ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/NOCT_AGRFC NOCT_AGRFC]] Component of the nopaline active transport system probably consisting of four subunits: Q, M, P and T. This system is also capable of transporting octopine provided that catabolic functions are induced with nopaline.
+
[https://www.uniprot.org/uniprot/NOCT_AGRFC NOCT_AGRFC] Component of the nopaline active transport system probably consisting of four subunits: Q, M, P and T. This system is also capable of transporting octopine provided that catabolic functions are induced with nopaline.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 23: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Morera, S]]
+
[[Category: Agrobacterium fabrum str. C58]]
-
[[Category: Vigouroux, A]]
+
[[Category: Large Structures]]
-
[[Category: Membrane protein]]
+
[[Category: Morera S]]
-
[[Category: Octopine]]
+
[[Category: Vigouroux A]]
-
[[Category: Opine]]
+
-
[[Category: Periplasmic binding protein]]
+

Current revision

Structure of the periplasmic binding protein M117N-NocT from A. tumefaciens in complex with octopine

PDB ID 5ito

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5ito"
Personal tools