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| ==E268D mutant of FAD synthetase from Corynebacterium ammoniagenes== | | ==E268D mutant of FAD synthetase from Corynebacterium ammoniagenes== |
- | <StructureSection load='3zug' size='340' side='right' caption='[[3zug]], [[Resolution|resolution]] 2.05Å' scene=''> | + | <StructureSection load='3zug' size='340' side='right'caption='[[3zug]], [[Resolution|resolution]] 2.05Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[3zug]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacterium_ammoniagenes"_cooke_and_keith_1927 "bacterium ammoniagenes" cooke and keith 1927]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZUG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZUG FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3zug]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_ammoniagenes Corynebacterium ammoniagenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZUG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZUG FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2x0k|2x0k]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zug FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zug OCA], [http://pdbe.org/3zug PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3zug RCSB], [http://www.ebi.ac.uk/pdbsum/3zug PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3zug ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zug FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zug OCA], [https://pdbe.org/3zug PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zug RCSB], [https://www.ebi.ac.uk/pdbsum/3zug PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zug ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/RIBF_CORAM RIBF_CORAM] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Bacterium ammoniagenes cooke and keith 1927]] | + | [[Category: Corynebacterium ammoniagenes]] |
- | [[Category: Herguedas, B]] | + | [[Category: Large Structures]] |
- | [[Category: Martinez-Julvez, M]] | + | [[Category: Herguedas B]] |
- | [[Category: Medina, M]] | + | [[Category: Martinez-Julvez M]] |
- | [[Category: Serrano, A]] | + | [[Category: Medina M]] |
- | [[Category: Flavin mononucleotide]]
| + | [[Category: Serrano A]] |
- | [[Category: Transferase]]
| + | |
| Structural highlights
Function
RIBF_CORAM
Publication Abstract from PubMed
Many known prokaryotic organisms depend on a single bifunctional enzyme, encoded by the RibC of RibF gene and named FAD synthetase (FADS), to convert Riboflavin (RF), first into FMN and then into FAD. The reaction occurs through the sequential action of two activities present on a single polypeptide chain where the N-terminus is responsible for the ATP:FMN adenylyltransferase (FMNAT) activity and the C-terminus for the ATP: riboflavin kinase (RFK) activity. Sequence and structural analysis suggest that T208, N210 and E268 at the C-terminus RFK module of Corynebacterium ammoniagenes FADS (CaFADS) might be key during RF phosphorylation. The effect of site-directed mutagenesis on the RFK activity, as well as on substrates and products binding, indicates that T208 and N210 provide the RFK active-site geometry for binding and catalysis, while E268 might be involved in the catalytic step as catalytic base. These data additionally suggest concerted conformational changes at the RFK module of CaFADS during its activity. Mutations at the RFK site also modulate the binding parameters at the FMNAT active site of CaFADS, altering the catalytic efficiency in the transformation of FMN into FAD. This observation supports the hypothesis that the hexameric assembly previously revealed by the crystal structure of CaFADS might play a functional role during catalysis.
Key Residues at the Riboflavin Kinase Catalytic Site of the Bifunctional Riboflavin Kinase/FMN Adenylyltransferase From Corynebacterium ammoniagenes.,Serrano A, Frago S, Herguedas B, Martinez-Julvez M, Velazquez-Campoy A, Medina M Cell Biochem Biophys. 2012 Aug 15. PMID:22892871[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Serrano A, Frago S, Herguedas B, Martinez-Julvez M, Velazquez-Campoy A, Medina M. Key Residues at the Riboflavin Kinase Catalytic Site of the Bifunctional Riboflavin Kinase/FMN Adenylyltransferase From Corynebacterium ammoniagenes. Cell Biochem Biophys. 2012 Aug 15. PMID:22892871 doi:10.1007/s12013-012-9403-9
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