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| ==Crystal structure of Bacillus thuringiensis Cry5B nematocidal toxin== | | ==Crystal structure of Bacillus thuringiensis Cry5B nematocidal toxin== |
- | <StructureSection load='4d8m' size='340' side='right' caption='[[4d8m]], [[Resolution|resolution]] 2.30Å' scene=''> | + | <StructureSection load='4d8m' size='340' side='right'caption='[[4d8m]], [[Resolution|resolution]] 2.30Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4d8m]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_cereus_var._thuringiensis"_smith_et_al._1952 "bacillus cereus var. thuringiensis" smith et al. 1952]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D8M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4D8M FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4d8m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_thuringiensis Bacillus thuringiensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D8M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4D8M FirstGlance]. <br> |
- | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cry5Ba, cryVB(a) ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1428 "Bacillus cereus var. thuringiensis" Smith et al. 1952])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3Å</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4d8m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4d8m OCA], [http://pdbe.org/4d8m PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4d8m RCSB], [http://www.ebi.ac.uk/pdbsum/4d8m PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4d8m ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4d8m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4d8m OCA], [https://pdbe.org/4d8m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4d8m RCSB], [https://www.ebi.ac.uk/pdbsum/4d8m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4d8m ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/CR5BA_BACTU CR5BA_BACTU] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| ==See Also== | | ==See Also== |
| *[[Delta-endotoxin|Delta-endotoxin]] | | *[[Delta-endotoxin|Delta-endotoxin]] |
| + | *[[Pesticidal crystal protein|Pesticidal crystal protein]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Bacillus cereus var. thuringiensis smith et al. 1952]] | + | [[Category: Bacillus thuringiensis]] |
- | [[Category: Aroian, R V]] | + | [[Category: Large Structures]] |
- | [[Category: Structural genomic]] | + | [[Category: Aroian RV]] |
- | [[Category: Fan, H]] | + | [[Category: Fan H]] |
- | [[Category: Ghosh, P]] | + | [[Category: Ghosh P]] |
- | [[Category: Hu, Y]] | + | [[Category: Hu Y]] |
- | [[Category: Glycolipid binding]]
| + | |
- | [[Category: Lipid binding protein]]
| + | |
| Structural highlights
Function
CR5BA_BACTU
Publication Abstract from PubMed
Crystal (Cry) proteins are globally used in agriculture as proteinaceous insecticides. They have also been recently recognized to have great potential as anthelmintic agents in targeting parasitic roundworms (e.g., hookworms). The most extensively characterized of the anthelmintic Cry proteins is Cry5B. We report here the 2.3 A resolution structure of the proteolytically activated form of Cry5B. This structure, which is the first for a nematicidal Cry protein, shows the familiar three-domain arrangement seen in insecticidal Cry proteins. However, domain II is unusual in that it more closely resembles a banana lectin than it does other Cry proteins. This result is consistent with the fact that the receptor for Cry5B consists of a set of invertebrate-specific glycans (attached to lipids) and also suggests that domain II is important for receptor binding. We found that not only galactose but also N-acetylgalactosamine (GalNAc) is an efficient competitor for binding between Cry5B and glycolipids. GalNAc is one of the core arthroseries tetrasaccharides of the Cry5B receptor and galactose an antennary sugar that emanates from this core. These and prior data suggest that the minimal binding determinant for Cry5B consists of a core GalNAc and two antennary galactoses. Lastly, the protoxin form of Cry5B was found to bind nematode glycolipids with a specificity equal to that of activated Cry5B, but with lower affinity. This suggests that the initial binding of Cry5B protoxin to glycolipids can be stabilized at the nematode cell surface by proteolysis. These results lay the groundwork for the design of effective Cry5B-based anthelmintics.
Structure and Glycolipid Binding Properties of the Nematicidal Protein Cry5B.,Hui F, Scheib U, Hu Y, Sommer RJ, Aroian RV, Ghosh P Biochemistry. 2012 Nov 26. PMID:23150986[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Hui F, Scheib U, Hu Y, Sommer RJ, Aroian RV, Ghosh P. Structure and Glycolipid Binding Properties of the Nematicidal Protein Cry5B. Biochemistry. 2012 Nov 26. PMID:23150986 doi:http://dx.doi.org/10.1021/bi301386q
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