This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4ayl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:38, 20 December 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Molecular structure of a metal-independent bacterial glycosyltransferase that catalyzes the synthesis of histo-blood group A antigen==
==Molecular structure of a metal-independent bacterial glycosyltransferase that catalyzes the synthesis of histo-blood group A antigen==
-
<StructureSection load='4ayl' size='340' side='right' caption='[[4ayl]], [[Resolution|resolution]] 1.92&Aring;' scene=''>
+
<StructureSection load='4ayl' size='340' side='right'caption='[[4ayl]], [[Resolution|resolution]] 1.92&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4ayl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacteroides_fragilis_subsp._ovatus"_(eggerth_and_gagnon_1933)_holdeman_and_moore_1970 "bacteroides fragilis subsp. ovatus" (eggerth and gagnon 1933) holdeman and moore 1970]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AYL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4AYL FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4ayl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_ovatus Bacteroides ovatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AYL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4AYL FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.919&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4ayj|4ayj]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glycoprotein-fucosylgalactoside_alpha-N-acetylgalactosaminyltransferase Glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.40 2.4.1.40] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ayl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ayl OCA], [https://pdbe.org/4ayl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ayl RCSB], [https://www.ebi.ac.uk/pdbsum/4ayl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ayl ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ayl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ayl OCA], [http://pdbe.org/4ayl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ayl RCSB], [http://www.ebi.ac.uk/pdbsum/4ayl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ayl ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A7LVT2_BACO1 A7LVT2_BACO1]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 20: Line 21:
==See Also==
==See Also==
-
*[[Glycosyltransferase|Glycosyltransferase]]
+
*[[Glycosyltransferase 3D structures|Glycosyltransferase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase]]
+
[[Category: Bacteroides ovatus]]
-
[[Category: Acharya, K R]]
+
[[Category: Large Structures]]
-
[[Category: Brewb, K]]
+
[[Category: Acharya KR]]
-
[[Category: Lizotte-Waniewskib, M]]
+
[[Category: Brewb K]]
-
[[Category: Pham, T T.K]]
+
[[Category: Lizotte-Waniewskib M]]
-
[[Category: Stinsonb, B]]
+
[[Category: Pham TTK]]
-
[[Category: Sundriyala, A]]
+
[[Category: Stinsonb B]]
-
[[Category: Thiyagarajan, N]]
+
[[Category: Sundriyala A]]
-
[[Category: Tumbale, P]]
+
[[Category: Thiyagarajan N]]
-
[[Category: Histo-blood group enzyme]]
+
[[Category: Tumbale P]]
-
[[Category: Transferase]]
+

Current revision

Molecular structure of a metal-independent bacterial glycosyltransferase that catalyzes the synthesis of histo-blood group A antigen

PDB ID 4ayl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools