5wsg
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 5wsg is ON HOLD Authors: Yan, C., Wan, R., Bai, R., Huang, G., Shi, Y. Description: Cryo-EM structure of the Catalytic Step II spliceosome (C* comp...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution== | |
| + | <SX load='5wsg' size='340' side='right' viewer='molstar' caption='[[5wsg]], [[Resolution|resolution]] 4.00Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[5wsg]] is a 13 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WSG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5WSG FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5wsg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wsg OCA], [https://pdbe.org/5wsg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5wsg RCSB], [https://www.ebi.ac.uk/pdbsum/5wsg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5wsg ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/MSL1_YEAST MSL1_YEAST] Involved in pre-mRNA splicing. This protein is associated with snRNP U2. It binds stem loop IV of U2 snRNA.<ref>PMID:8649387</ref> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Each cycle of precursor messenger RNA (pre-mRNA) splicing comprises two sequential reactions, first freeing the 5' exon and generating an intron lariat-3' exon and then ligating the two exons and releasing the intron lariat. The second reaction is executed by the step II catalytically activated spliceosome (known as the C* complex). Here, we present the cryo-electron microscopy structure of a C* complex from Saccharomyces cerevisiae at an average resolution of 4.0 angstroms. Compared with the preceding spliceosomal complex (C complex), the lariat junction has been translocated by 15 to 20 angstroms to vacate space for the incoming 3'-exon sequences. The step I splicing factors Cwc25 and Yju2 have been dissociated from the active site. Two catalytic motifs from Prp8 (the 1585 loop and the beta finger of the ribonuclease H-like domain), along with the step II splicing factors Prp17 and Prp18 and other surrounding proteins, are poised to assist the second transesterification. These structural features, together with those reported for other spliceosomal complexes, yield a near-complete mechanistic picture on the splicing cycle. | ||
| - | + | Structure of a yeast step II catalytically activated spliceosome.,Yan C, Wan R, Bai R, Huang G, Shi Y Science. 2017 Jan 13;355(6321):149-155. doi: 10.1126/science.aak9979. Epub 2016, Dec 15. PMID:27980089<ref>PMID:27980089</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 5wsg" style="background-color:#fffaf0;"></div> |
| - | [[Category: | + | |
| - | [[Category: Shi | + | ==See Also== |
| - | [[Category: | + | *[[Nucleoprotein 3D structures|Nucleoprotein 3D structures]] |
| - | [[Category: | + | *[[Pre-mRNA splicing factors 3D structures|Pre-mRNA splicing factors 3D structures]] |
| + | *[[Sm-like protein 3D structures|Sm-like protein 3D structures]] | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </SX> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Saccharomyces cerevisiae S288C]] | ||
| + | [[Category: Bai R]] | ||
| + | [[Category: Huang G]] | ||
| + | [[Category: Shi Y]] | ||
| + | [[Category: Wan R]] | ||
| + | [[Category: Yan C]] | ||
Current revision
Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution
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