This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5m2c

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (18:21, 1 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Structural tuning of CD81LEL (space group P32 1 2)==
==Structural tuning of CD81LEL (space group P32 1 2)==
-
<StructureSection load='5m2c' size='340' side='right' caption='[[5m2c]], [[Resolution|resolution]] 1.96&Aring;' scene=''>
+
<StructureSection load='5m2c' size='340' side='right'caption='[[5m2c]], [[Resolution|resolution]] 1.96&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5m2c]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M2C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5M2C FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5m2c]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M2C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5M2C FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.961&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1g8q|1g8q]], [[1iv5|1iv5]], [[5m3d|5m3d]], [[5m4r|5m4r]], [[5m33|5m33]], [[5m3t|5m3t]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5m2c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m2c OCA], [http://pdbe.org/5m2c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5m2c RCSB], [http://www.ebi.ac.uk/pdbsum/5m2c PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5m2c ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5m2c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m2c OCA], [https://pdbe.org/5m2c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5m2c RCSB], [https://www.ebi.ac.uk/pdbsum/5m2c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5m2c ProSAT]</span></td></tr>
</table>
</table>
== Disease ==
== Disease ==
-
[[http://www.uniprot.org/uniprot/CD81_HUMAN CD81_HUMAN]] Defects in CD81 are the cause of immunodeficiency common variable type 6 (CVID6) [MIM:[http://omim.org/entry/613496 613496]]; also called antibody deficiency due to CD81 defect. CVID6 is a primary immunodeficiency characterized by antibody deficiency, hypogammaglobulinemia, recurrent bacterial infections and an inability to mount an antibody response to antigen. The defect results from a failure of B-cell differentiation and impaired secretion of immunoglobulins; the numbers of circulating B-cells is usually in the normal range, but can be low.<ref>PMID:20237408</ref>
+
[https://www.uniprot.org/uniprot/CD81_HUMAN CD81_HUMAN] Defects in CD81 are the cause of immunodeficiency common variable type 6 (CVID6) [MIM:[https://omim.org/entry/613496 613496]; also called antibody deficiency due to CD81 defect. CVID6 is a primary immunodeficiency characterized by antibody deficiency, hypogammaglobulinemia, recurrent bacterial infections and an inability to mount an antibody response to antigen. The defect results from a failure of B-cell differentiation and impaired secretion of immunoglobulins; the numbers of circulating B-cells is usually in the normal range, but can be low.<ref>PMID:20237408</ref>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/CD81_HUMAN CD81_HUMAN]] May play an important role in the regulation of lymphoma cell growth. Interacts with a 16-kDa Leu-13 protein to form a complex possibly involved in signal transduction. May act as the viral receptor for HCV.
+
[https://www.uniprot.org/uniprot/CD81_HUMAN CD81_HUMAN] May play an important role in the regulation of lymphoma cell growth. Interacts with a 16-kDa Leu-13 protein to form a complex possibly involved in signal transduction. May act as the viral receptor for HCV.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 21:
</div>
</div>
<div class="pdbe-citations 5m2c" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5m2c" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[CD81|CD81]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Abrescia, N G.A]]
+
[[Category: Homo sapiens]]
-
[[Category: Cell adhesion]]
+
[[Category: Large Structures]]
-
[[Category: Human cellular receptor for hepatitis c virus]]
+
[[Category: Abrescia NG]]
 +
[[Category: Cunha ES]]
 +
[[Category: Hospital A]]
 +
[[Category: Orozco M]]
 +
[[Category: Rojas AL]]
 +
[[Category: Roversi P]]
 +
[[Category: Sfriso P]]

Current revision

Structural tuning of CD81LEL (space group P32 1 2)

PDB ID 5m2c

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools