1qy9

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[[Image:1qy9.gif|left|200px]]
 
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{{Structure
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==Crystal structure of E. coli Se-MET protein YDDE==
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|PDB= 1qy9 |SIZE=350|CAPTION= <scene name='initialview01'>1qy9</scene>, resolution 2.05&Aring;
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<StructureSection load='1qy9' size='340' side='right'caption='[[1qy9]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HYD:HYDROXY+GROUP'>HYD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
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<table><tr><td colspan='2'>[[1qy9]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QY9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QY9 FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
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|GENE= YDDE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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|DOMAIN=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qy9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qy9 OCA], [https://pdbe.org/1qy9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qy9 RCSB], [https://www.ebi.ac.uk/pdbsum/1qy9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qy9 ProSAT]</span></td></tr>
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|RELATEDENTRY=[[1qya|1QYA]]
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</table>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qy9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qy9 OCA], [http://www.ebi.ac.uk/pdbsum/1qy9 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1qy9 RCSB]</span>
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== Function ==
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}}
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[https://www.uniprot.org/uniprot/YDDE_ECOLI YDDE_ECOLI]
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== Evolutionary Conservation ==
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'''Crystal structure of E. coli Se-MET protein YDDE'''
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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==About this Structure==
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qy/1qy9_consurf.spt"</scriptWhenChecked>
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1QY9 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QY9 OCA].
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==Reference==
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</jmolCheckbox>
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Crystal structure of E. coli yddE protein reveals a striking homology with diaminopimelate epimerase., Grassick A, Sulzenbacher G, Roig-Zamboni V, Campanacci V, Cambillau C, Bourne Y, Proteins. 2004 May 15;55(3):764-7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15103639 15103639]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qy9 ConSurf].
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<div style="clear:both"></div>
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__TOC__
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</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Bourne, Y.]]
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[[Category: Bourne Y]]
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[[Category: Cambillau, C.]]
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[[Category: Cambillau C]]
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[[Category: Campanacci, V.]]
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[[Category: Campanacci V]]
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[[Category: Grassick, A.]]
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[[Category: Grassick A]]
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[[Category: Roig-Zamboni, V.]]
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[[Category: Roig-Zamboni V]]
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[[Category: Sulzenbacher, G.]]
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[[Category: Sulzenbacher G]]
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[[Category: antibiotic biosynthesis protein]]
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[[Category: epimerase]]
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[[Category: putative phenazine biosynthesis protein]]
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[[Category: structural genomic]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 23:20:41 2008''
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Current revision

Crystal structure of E. coli Se-MET protein YDDE

PDB ID 1qy9

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