1gjy

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[[Image:1gjy.gif|left|200px]]<br />
 
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<applet load="1gjy" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1gjy, resolution 2.2&Aring;" />
 
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'''THE X-RAY STRUCTURE OF THE SORCIN CALCIUM BINDING DOMAIN (SCBD) PROVIDES INSIGHT INTO THE PHOSPHORYLATION AND CALCIUM DEPENDENT PROCESSESS'''<br />
 
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==Overview==
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==The X-ray structure of the Sorcin Calcium Binding Domain (SCBD) provides insight into the phosphorylation and calcium dependent processess==
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Sorcin is a 21.6 kDa calcium binding protein, expressed in a number of, mammalian tissues that belongs to the small, recently identified, penta-EF-hand (PEF) family. Like all members of this family, sorcin, undergoes a Ca2+-dependent translocation from cytosol to membranes where, it binds to target proteins. For sorcin, the targets differ in different, tissues, indicating that it takes part in a number of Ca2+-regulated, processes. The sorcin monomer is organized in two domains like in all PEF, proteins: a flexible, hydrophobic, glycine-rich N-terminal region and a, calcium binding C-terminal domain. In vitro, the PEF proteins are dimeric, in their Ca2+-free form, but have a marked tendency to precipitate when, bound to calcium. Stabilization of the dimeric structure is achieved by, pairing of the uneven EF-hand, EF5. Sorcin can also form tetramers at acid, pH.The sorcin calcium binding domain (SCBD, residues 33-198) expressed in, Escherichia coli was crystallized in the Ca2+-free form. The structure was, solved by molecular replacement and was refined to 2.2 A with a, crystallographic R-factor of 22.4 %. Interestingly, the asymmetric unit, contains two dimers.The structure of the SCBD leads to a model that, explains the solution properties and describes the Ca2+-induced, conformational changes. Phosphorylation studies show that the N-terminal, domain hinders phosphorylation of SCBD, i.e. the rate of phosphorylation, increased twofold in the absence of the N-terminal region. In addition, previous fluorescence studies indicated that hydrophobic residues are, exposed to solvent upon Ca2+ binding to full-length sorcin. The model, accounts for these data by proposing that Ca2+ binding weakens the, interactions between the two domains and leads to their reorientation, which exposes hydrophobic regions facilitating the Ca2+-dependent binding, to target proteins at or near membranes.
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<StructureSection load='1gjy' size='340' side='right'caption='[[1gjy]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1gjy]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Cricetulus_griseus Cricetulus griseus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GJY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GJY FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gjy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gjy OCA], [https://pdbe.org/1gjy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gjy RCSB], [https://www.ebi.ac.uk/pdbsum/1gjy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gjy ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/SORCN_CRIGR SORCN_CRIGR] Calcium-binding protein that modulates excitation-contraction coupling in the heart. Contributes to calcium homeostasis in the sarcoplasmic reticulum in the heart. Modulates the activity of RYR2 calcium channels.<ref>PMID:15754088</ref> <ref>PMID:17029407</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gj/1gjy_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1gjy ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Sorcin is a 21.6 kDa calcium binding protein, expressed in a number of mammalian tissues that belongs to the small, recently identified penta-EF-hand (PEF) family. Like all members of this family, sorcin undergoes a Ca2+-dependent translocation from cytosol to membranes where it binds to target proteins. For sorcin, the targets differ in different tissues, indicating that it takes part in a number of Ca2+-regulated processes. The sorcin monomer is organized in two domains like in all PEF proteins: a flexible, hydrophobic, glycine-rich N-terminal region and a calcium binding C-terminal domain. In vitro, the PEF proteins are dimeric in their Ca2+-free form, but have a marked tendency to precipitate when bound to calcium. Stabilization of the dimeric structure is achieved by pairing of the uneven EF-hand, EF5. Sorcin can also form tetramers at acid pH.The sorcin calcium binding domain (SCBD, residues 33-198) expressed in Escherichia coli was crystallized in the Ca2+-free form. The structure was solved by molecular replacement and was refined to 2.2 A with a crystallographic R-factor of 22.4 %. Interestingly, the asymmetric unit contains two dimers.The structure of the SCBD leads to a model that explains the solution properties and describes the Ca2+-induced conformational changes. Phosphorylation studies show that the N-terminal domain hinders phosphorylation of SCBD, i.e. the rate of phosphorylation increased twofold in the absence of the N-terminal region. In addition, previous fluorescence studies indicated that hydrophobic residues are exposed to solvent upon Ca2+ binding to full-length sorcin. The model accounts for these data by proposing that Ca2+ binding weakens the interactions between the two domains and leads to their reorientation, which exposes hydrophobic regions facilitating the Ca2+-dependent binding to target proteins at or near membranes.
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==About this Structure==
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The crystal structure of the sorcin calcium binding domain provides a model of Ca2+-dependent processes in the full-length protein.,Ilari A, Johnson KA, Nastopoulos V, Verzili D, Zamparelli C, Colotti G, Tsernoglou D, Chiancone E J Mol Biol. 2002 Mar 29;317(3):447-58. PMID:11922676<ref>PMID:11922676</ref>
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1GJY is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Cricetulus_longicaudatus Cricetulus longicaudatus] with SO4 as [http://en.wikipedia.org/wiki/ligand ligand]. Structure known Active Site: AC1. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1GJY OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The crystal structure of the sorcin calcium binding domain provides a model of Ca2+-dependent processes in the full-length protein., Ilari A, Johnson KA, Nastopoulos V, Verzili D, Zamparelli C, Colotti G, Tsernoglou D, Chiancone E, J Mol Biol. 2002 Mar 29;317(3):447-58. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11922676 11922676]
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</div>
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[[Category: Cricetulus longicaudatus]]
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<div class="pdbe-citations 1gjy" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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== References ==
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[[Category: Chiancone, E.]]
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<references/>
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[[Category: Ilari, A.]]
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__TOC__
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[[Category: Johnson, K.A.]]
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</StructureSection>
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[[Category: Nastopoulos, V.]]
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[[Category: Cricetulus griseus]]
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[[Category: Tsernoglou, D.]]
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[[Category: Large Structures]]
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[[Category: SO4]]
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[[Category: Chiancone E]]
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[[Category: calcium-binding]]
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[[Category: Ilari A]]
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[[Category: phosphorylation]]
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[[Category: Johnson KA]]
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[[Category: Nastopoulos V]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 5 16:13:57 2007''
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[[Category: Tsernoglou D]]

Current revision

The X-ray structure of the Sorcin Calcium Binding Domain (SCBD) provides insight into the phosphorylation and calcium dependent processess

PDB ID 1gjy

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