1r2j

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:19, 14 February 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1r2j.gif|left|200px]]
 
-
{{Structure
+
==FkbI for Biosynthesis of Methoxymalonyl Extender Unit of Fk520 Polyketide Immunosuppresant==
-
|PDB= 1r2j |SIZE=350|CAPTION= <scene name='initialview01'>1r2j</scene>, resolution 2.10&Aring;
+
<StructureSection load='1r2j' size='340' side='right'caption='[[1r2j]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>
+
<table><tr><td colspan='2'>[[1r2j]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_hygroscopicus Streptomyces hygroscopicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R2J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1R2J FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1r2j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r2j OCA], [https://pdbe.org/1r2j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1r2j RCSB], [https://www.ebi.ac.uk/pdbsum/1r2j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1r2j ProSAT]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r2j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r2j OCA], [http://www.ebi.ac.uk/pdbsum/1r2j PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1r2j RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q9KIE5_STRHY Q9KIE5_STRHY]
-
 
+
== Evolutionary Conservation ==
-
'''FkbI for Biosynthesis of Methoxymalonyl Extender Unit of Fk520 Polyketide Immunosuppresant'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==Overview==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r2/1r2j_consurf.spt"</scriptWhenChecked>
-
Polyketide synthases (PKSs) synthesize the polyketide cores of pharmacologically important natural products such as the immunosuppressants FK520 and FK506. Understanding polyketide biosynthesis at atomic resolution could present new opportunities for chemo-enzymatic synthesis of complex molecules. The crystal structure of FkbI, an enzyme involved in the biosynthesis of the methoxymalonyl extender unit of FK520, was solved to 2.1A with an R(crys) of 24.4%. FkbI has a similar fold to acyl-CoA dehydrogenases. Notwithstanding this similarity, the surface and substrate-binding site of FkbI reveal key differences from other acyl-CoA dehydrogenases, suggesting that FkbI may recognize an acyl-ACP substrate rather than an acyl-CoA substrate. This structural observation coincided the genetic experiment done by Carroll et al. J. Am. Chem. Soc., 124 (2002) 4176. Although an in vitro assay for FkbI remains elusive, the structural basis for the substrate specificity of FkbI is analyzed by a combination of sequence comparison, docking simulations and structural analysis. A biochemical mechanism for the role of FkbI in the biosynthesis of methoxymalonyl-ACP is proposed.
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1R2J is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_hygroscopicus Streptomyces hygroscopicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R2J OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1r2j ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
Crystal structure of an Acyl-ACP dehydrogenase from the FK520 polyketide biosynthetic pathway: insights into extender unit biosynthesis., Watanabe K, Khosla C, Stroud RM, Tsai SC, J Mol Biol. 2003 Nov 28;334(3):435-44. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14623185 14623185]
+
</StructureSection>
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
[[Category: Streptomyces hygroscopicus]]
[[Category: Streptomyces hygroscopicus]]
-
[[Category: Khosla, C.]]
+
[[Category: Khosla C]]
-
[[Category: Stroud, R M.]]
+
[[Category: Stroud RM]]
-
[[Category: Tsai, S C.]]
+
[[Category: Tsai S-C]]
-
[[Category: Watanabe, K.]]
+
[[Category: Watanabe K]]
-
[[Category: acyl-coa dehydrogenase]]
+
-
[[Category: aldehyde dehydrogenase]]
+
-
[[Category: crystal structure]]
+
-
[[Category: fk506]]
+
-
[[Category: fk520]]
+
-
[[Category: polyketide]]
+
-
[[Category: polyketide synthase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 23:22:19 2008''
+

Current revision

FkbI for Biosynthesis of Methoxymalonyl Extender Unit of Fk520 Polyketide Immunosuppresant

PDB ID 1r2j

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1r2j"
Personal tools