1r37

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:23, 25 October 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1r37.jpg|left|200px]]
 
-
{{Structure
+
==Alcohol dehydrogenase from sulfolobus solfataricus complexed with NAD(H) and 2-ethoxyethanol==
-
|PDB= 1r37 |SIZE=350|CAPTION= <scene name='initialview01'>1r37</scene>, resolution 2.30&Aring;
+
<StructureSection load='1r37' size='340' side='right'caption='[[1r37]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=ETX:2-ETHOXYETHANOL'>ETX</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
+
<table><tr><td colspan='2'>[[1r37]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharolobus_solfataricus Saccharolobus solfataricus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R37 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1R37 FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Alcohol_dehydrogenase Alcohol dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.1 1.1.1.1] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
|GENE= ADH or SSO2536 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2287 Sulfolobus solfataricus])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ETX:2-ETHOXYETHANOL'>ETX</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1r37 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r37 OCA], [https://pdbe.org/1r37 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1r37 RCSB], [https://www.ebi.ac.uk/pdbsum/1r37 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1r37 ProSAT]</span></td></tr>
-
|RELATEDENTRY=[[1jvb|1JVB]], [[1nto|1NTO]], [[1nvg|1NVG]]
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r37 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r37 OCA], [http://www.ebi.ac.uk/pdbsum/1r37 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1r37 RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/ADH_SACS2 ADH_SACS2]
-
 
+
== Evolutionary Conservation ==
-
'''Alcohol dehydrogenase from sulfolobus solfataricus complexed with NAD(H) and 2-ethoxyethanol'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==Overview==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r3/1r37_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1r37 ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
The crystal structure of a ternary complex of the alcohol dehydrogenase from the archaeon Sulfolobus solfataricus (SsADH) has been determined at 2.3 A. The asymmetric unit contains a dimer with a NADH and a 2-ethoxyethanol molecule bound to each subunit. The comparison with the apo structure of the enzyme reveals that this medium chain ADH undergoes a substantial conformational change in the apo-holo transition, accompanied by loop movements at the domain interface. The extent of domain closure is similar to that observed for the classical horse liver ADH, although some differences are found which can be related to the different oligomeric states of the enzymes. Compared to its apo form, the SsADH ternary complex shows a change in the ligation state of the active site zinc ion which is no longer bound to Glu69, providing additional evidence of the dynamic role played by the conserved glutamate residue in ADHs. In addition, the structure presented here allows the identification of the substrate site and hence of the residues that are important in the binding of both the substrate and the coenzyme.
The crystal structure of a ternary complex of the alcohol dehydrogenase from the archaeon Sulfolobus solfataricus (SsADH) has been determined at 2.3 A. The asymmetric unit contains a dimer with a NADH and a 2-ethoxyethanol molecule bound to each subunit. The comparison with the apo structure of the enzyme reveals that this medium chain ADH undergoes a substantial conformational change in the apo-holo transition, accompanied by loop movements at the domain interface. The extent of domain closure is similar to that observed for the classical horse liver ADH, although some differences are found which can be related to the different oligomeric states of the enzymes. Compared to its apo form, the SsADH ternary complex shows a change in the ligation state of the active site zinc ion which is no longer bound to Glu69, providing additional evidence of the dynamic role played by the conserved glutamate residue in ADHs. In addition, the structure presented here allows the identification of the substrate site and hence of the residues that are important in the binding of both the substrate and the coenzyme.
-
==About this Structure==
+
Crystal structure of a ternary complex of the alcohol dehydrogenase from Sulfolobus solfataricus.,Esposito L, Bruno I, Sica F, Raia CA, Giordano A, Rossi M, Mazzarella L, Zagari A Biochemistry. 2003 Dec 16;42(49):14397-407. PMID:14661950<ref>PMID:14661950</ref>
-
1R37 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Sulfolobus_solfataricus Sulfolobus solfataricus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R37 OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
Crystal structure of a ternary complex of the alcohol dehydrogenase from Sulfolobus solfataricus., Esposito L, Bruno I, Sica F, Raia CA, Giordano A, Rossi M, Mazzarella L, Zagari A, Biochemistry. 2003 Dec 16;42(49):14397-407. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14661950 14661950]
+
</div>
-
[[Category: Alcohol dehydrogenase]]
+
<div class="pdbe-citations 1r37" style="background-color:#fffaf0;"></div>
-
[[Category: Single protein]]
+
-
[[Category: Sulfolobus solfataricus]]
+
-
[[Category: Bruno, I.]]
+
-
[[Category: Esposito, L.]]
+
-
[[Category: Giordano, A.]]
+
-
[[Category: Mazzarella, L.]]
+
-
[[Category: Raia, C A.]]
+
-
[[Category: Rossi, M.]]
+
-
[[Category: Sica, F.]]
+
-
[[Category: Zagari, A.]]
+
-
[[Category: archaeon]]
+
-
[[Category: holoform]]
+
-
[[Category: nad(h) dependent]]
+
-
[[Category: zinc]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 23:22:37 2008''
+
==See Also==
 +
*[[Alcohol dehydrogenase 3D structures|Alcohol dehydrogenase 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Saccharolobus solfataricus]]
 +
[[Category: Bruno I]]
 +
[[Category: Esposito L]]
 +
[[Category: Giordano A]]
 +
[[Category: Mazzarella L]]
 +
[[Category: Raia CA]]
 +
[[Category: Rossi M]]
 +
[[Category: Sica F]]
 +
[[Category: Zagari A]]

Current revision

Alcohol dehydrogenase from sulfolobus solfataricus complexed with NAD(H) and 2-ethoxyethanol

PDB ID 1r37

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools