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| | ==Crystal structure of apo-form glutaminyl cyclase from Ixodes scapularis in complex with PBD150== | | ==Crystal structure of apo-form glutaminyl cyclase from Ixodes scapularis in complex with PBD150== |
| - | <StructureSection load='4mhz' size='340' side='right' caption='[[4mhz]], [[Resolution|resolution]] 1.95Å' scene=''> | + | <StructureSection load='4mhz' size='340' side='right'caption='[[4mhz]], [[Resolution|resolution]] 1.95Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4mhz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Black-legged_tick Black-legged tick]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MHZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4MHZ FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4mhz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ixodes_scapularis Ixodes scapularis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MHZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4MHZ FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PBD:1-(3,4-DIMETHOXYPHENYL)-3-[3-(1H-IMIDAZOL-1-YL)PROPYL]THIOUREA'>PBD</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4mhn|4mhn]], [[4mhp|4mhp]], [[4mhy|4mhy]]</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PBD:1-(3,4-DIMETHOXYPHENYL)-3-[3-(1H-IMIDAZOL-1-YL)PROPYL]THIOUREA'>PBD</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">IscW_ISCW023264 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6945 Black-legged tick])</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4mhz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mhz OCA], [https://pdbe.org/4mhz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4mhz RCSB], [https://www.ebi.ac.uk/pdbsum/4mhz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4mhz ProSAT]</span></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glutaminyl-peptide_cyclotransferase Glutaminyl-peptide cyclotransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.2.5 2.3.2.5] </span></td></tr>
| + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4mhz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mhz OCA], [http://pdbe.org/4mhz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4mhz RCSB], [http://www.ebi.ac.uk/pdbsum/4mhz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4mhz ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/QPCT_IXOSC QPCT_IXOSC] Responsible for the biosynthesis of pyroglutamyl peptides (PubMed:23770496, PubMed:24598748). Seems to have a preference for substrates with neutral or hydrophobic amino-acid residues at the second and third positions (PubMed:24598748). Shows activity towards the peptides [Gln-1]-corazonin, [Gln-1]-periviscerokinin and [Gln-1]-sulfakinin (PubMed:24598748).<ref>PMID:23770496</ref> <ref>PMID:24598748</ref> |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | </div> | | </div> |
| | <div class="pdbe-citations 4mhz" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 4mhz" style="background-color:#fffaf0;"></div> |
| | + | |
| | + | ==See Also== |
| | + | *[[Glutaminyl cyclase|Glutaminyl cyclase]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Black-legged tick]] | + | [[Category: Ixodes scapularis]] |
| - | [[Category: Glutaminyl-peptide cyclotransferase]] | + | [[Category: Large Structures]] |
| - | [[Category: Hsu, H L]] | + | [[Category: Hsu HL]] |
| - | [[Category: Huang, K F]] | + | [[Category: Huang KF]] |
| - | [[Category: Wang, A H.J]] | + | [[Category: Wang AHJ]] |
| - | [[Category: Alpha/beta-mixed fold]]
| + | |
| - | [[Category: Glutaminyl cyclase]]
| + | |
| - | [[Category: Pbd150]]
| + | |
| - | [[Category: Secreted protein]]
| + | |
| - | [[Category: Transferase]]
| + | |
| Structural highlights
Function
QPCT_IXOSC Responsible for the biosynthesis of pyroglutamyl peptides (PubMed:23770496, PubMed:24598748). Seems to have a preference for substrates with neutral or hydrophobic amino-acid residues at the second and third positions (PubMed:24598748). Shows activity towards the peptides [Gln-1]-corazonin, [Gln-1]-periviscerokinin and [Gln-1]-sulfakinin (PubMed:24598748).[1] [2]
Publication Abstract from PubMed
Glutaminyl cyclases (QCs) from mammals and Drosophila are zinc-dependent enzymes that catalyze N-terminal pyroglutamate formation of numerous proteins and peptides. These enzymes have been found to be critical for the oviposition and embryogenesis of ticks, implying that they are possible physiological targets for tick control. Here, 1.10-1.15 A resolution structures of a metal-independent QC from the black-legged tick Ixodes scapularis (Is-QC) are reported. The structures exhibit the typical scaffold of mammalian QCs but have two extra disulfide bridges that stabilize the central beta-sheet, resulting in an increased thermal stability. Is-QC contains ~0.5 stoichiometric zinc ions, which could be removed by 1 mM EDTA. Compared with the Zn-bound form, apo-Is-QC has a nearly identical active-site structure and stability, but unexpectedly possesses significantly increased QC activities towards both synthetic and physiological substrates. Enzyme-kinetic analysis revealed that apo-Is-QC has a stronger substrate-binding affinity, suggesting that bound zinc interferes with substrate binding during catalysis. The structures of Is-QC bound to the inhibitor PBD150 revealed similar binding modes to both forms of Is-QC, with the exception of the inhibitor imidazole ring, which is consistent with the comparable inhibition activities of the inhibitor towards both forms of Is-QC. These findings have implications for the design of new QC inhibitors.
Structural and functional analyses of a glutaminyl cyclase from Ixodes scapularis reveal metal-independent catalysis and inhibitor binding.,Huang KF, Hsu HL, Karim S, Wang AH Acta Crystallogr D Biol Crystallogr. 2014 Mar;70(Pt 3):789-801. doi:, 10.1107/S1399004713033488. Epub 2014 Feb 22. PMID:24598748[3]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Adamson SW, Browning RE, Chao CC, Bateman RC Jr, Ching WM, Karim S. Molecular characterization of tick salivary gland glutaminyl cyclase. Insect Biochem Mol Biol. 2013 Sep;43(9):781-93. doi: 10.1016/j.ibmb.2013.05.011. , Epub 2013 Jun 13. PMID:23770496 doi:http://dx.doi.org/10.1016/j.ibmb.2013.05.011
- ↑ Huang KF, Hsu HL, Karim S, Wang AH. Structural and functional analyses of a glutaminyl cyclase from Ixodes scapularis reveal metal-independent catalysis and inhibitor binding. Acta Crystallogr D Biol Crystallogr. 2014 Mar;70(Pt 3):789-801. doi:, 10.1107/S1399004713033488. Epub 2014 Feb 22. PMID:24598748 doi:http://dx.doi.org/10.1107/S1399004713033488
- ↑ Huang KF, Hsu HL, Karim S, Wang AH. Structural and functional analyses of a glutaminyl cyclase from Ixodes scapularis reveal metal-independent catalysis and inhibitor binding. Acta Crystallogr D Biol Crystallogr. 2014 Mar;70(Pt 3):789-801. doi:, 10.1107/S1399004713033488. Epub 2014 Feb 22. PMID:24598748 doi:http://dx.doi.org/10.1107/S1399004713033488
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