5wv3
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 5wv3 is ON HOLD Authors: Singh, P.K., Sirohi, H.V., Kaur, P., Sharma, S., Singh, T.P. Description: Crystal structure of bovine lactoperoxidase with...) |
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- | '''Unreleased structure''' | ||
- | + | ==Crystal structure of bovine lactoperoxidase with a partial Glu258-heme linkage at 2.07 A resolution.== | |
+ | <StructureSection load='5wv3' size='340' side='right'caption='[[5wv3]], [[Resolution|resolution]] 2.07Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[5wv3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WV3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5WV3 FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.07Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=OSM:1-(OXIDOSULFANYL)METHANAMINE'>OSM</scene>, <scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5wv3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wv3 OCA], [https://pdbe.org/5wv3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5wv3 RCSB], [https://www.ebi.ac.uk/pdbsum/5wv3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5wv3 ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/PERL_BOVIN PERL_BOVIN] LPO is an antimicrobial agent. It is thought to help protect the udder from infection and promote growth in newborn calves. | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | The mammalian heme peroxidases including lactoperoxidase (LPO), myeloperoxidase (MPO), eosinophil peroxidase (EPO) and thyroid peroxidase (TPO) contain a covalently linked heme moiety. Initially, it was believed that the heme group was fully cross-linked to protein molecule through at least two ester linkages involving conserved glutamate and aspartate residues with 1-methyl and 5-methyl groups of pyrrole rings A and C respectively. In MPO, an additional sulfonium ion linkage was present between 2-vinyl group of pyrrole ring A of the heme moiety and a methionine residue of the protein. These linkages were formed through a self processing mechanism. Subsequently, biochemical studies indicated that the heme moiety was partially attached to protein. The recent structural studies have shown that the covalent linkage involving glutamate and 1-methyl group of pyrrole ring of heme moiety was partially formed. When glutamate is not covalently linked to heme moiety, its side chain occupies a position in the substrate binding site on the distal heme side and blocks the substrate binding site leading to inactivation. However, an exposure to H2O2 converts it to a fully covalently linked state with heme. Thus in mammalian heme peroxidases, the Glu-heme linkage is essential for catalytic action. | ||
- | + | Structural basis of activation of mammalian heme peroxidases.,Singh PK, Iqbal N, Sirohi HV, Bairagya HR, Kaur P, Sharma S, Singh TP Prog Biophys Mol Biol. 2018 Mar;133:49-55. doi: 10.1016/j.pbiomolbio.2017.11.003., Epub 2017 Nov 22. PMID:29174286<ref>PMID:29174286</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
- | [[Category: | + | <div class="pdbe-citations 5wv3" style="background-color:#fffaf0;"></div> |
- | [[Category: | + | |
- | [[Category: Singh | + | ==See Also== |
- | [[Category: | + | *[[Lactoperoxidase|Lactoperoxidase]] |
- | [[Category: | + | == References == |
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Bos taurus]] | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Kaur P]] | ||
+ | [[Category: Sharma S]] | ||
+ | [[Category: Singh PK]] | ||
+ | [[Category: Singh TP]] | ||
+ | [[Category: Sirohi HV]] |
Current revision
Crystal structure of bovine lactoperoxidase with a partial Glu258-heme linkage at 2.07 A resolution.
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Categories: Bos taurus | Large Structures | Kaur P | Sharma S | Singh PK | Singh TP | Sirohi HV