5ml3

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'''Unreleased structure'''
 
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The entry 5ml3 is ON HOLD until Paper Publication
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==The crystal structure of PDE6D in complex to Deltasonamide1==
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<StructureSection load='5ml3' size='340' side='right'caption='[[5ml3]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5ml3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ML3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ML3 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DL3:~{N}1-[(4-CHLOROPHENYL)METHYL]-~{N}1-CYCLOPENTYL-~{N}4-[[2-(METHYLAMINO)PYRIMIDIN-4-YL]METHYL]-~{N}4-(PIPERIDIN-4-YLMETHYL)BENZENE-1,4-DISULFONAMIDE'>DL3</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ml3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ml3 OCA], [https://pdbe.org/5ml3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ml3 RCSB], [https://www.ebi.ac.uk/pdbsum/5ml3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ml3 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PDE6D_HUMAN PDE6D_HUMAN] Acts as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude and does so by decreasing the nucleotide dissociation rate. Stabilizes Arl3-GTP by decreasing the nucleotide dissociation (By similarity).
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Small-molecule inhibition of the interaction between the KRas oncoprotein and the chaperone PDE6delta impairs KRas spatial organization and signaling in cells. However, despite potent binding in vitro (KD &lt;10 nm), interference with Ras signaling and growth inhibition require 5-20 mum compound concentrations. We demonstrate that these findings can be explained by fast release of high-affinity inhibitors from PDE6delta by the release factor Arl2. This limitation is overcome by novel highly selective inhibitors that bind to PDE6delta with up to 7 hydrogen bonds, resulting in picomolar affinity. Their release by Arl2 is greatly decreased, and representative compounds selectively inhibit growth of KRas mutated and -dependent cells with the highest activity recorded yet. Our findings indicate that very potent inhibitors of the KRas-PDE6delta interaction may impair the growth of tumors driven by oncogenic KRas.
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Authors: Fansa, E.K., Martin-Gago, P., Waldmann, H., Wittinghofer, A.
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A PDE6delta-KRas Inhibitor Chemotype with up to Seven H-Bonds and Picomolar Affinity that Prevents Efficient Inhibitor Release by Arl2.,Martin-Gago P, Fansa EK, Klein CH, Murarka S, Janning P, Schurmann M, Metz M, Ismail S, Schultz-Fademrecht C, Baumann M, Bastiaens PI, Wittinghofer A, Waldmann H Angew Chem Int Ed Engl. 2017 Jan 20. doi: 10.1002/anie.201610957. PMID:28106325<ref>PMID:28106325</ref>
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Description: The crystal structure of PDE6D in complex to Deltasonamide1
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Waldmann, H]]
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<div class="pdbe-citations 5ml3" style="background-color:#fffaf0;"></div>
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[[Category: Martin-Gago, P]]
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[[Category: Wittinghofer, A]]
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==See Also==
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[[Category: Fansa, E.K]]
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*[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Fansa EK]]
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[[Category: Martin-Gago P]]
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[[Category: Waldmann H]]
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[[Category: Wittinghofer A]]

Current revision

The crystal structure of PDE6D in complex to Deltasonamide1

PDB ID 5ml3

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