This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5tf6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:20, 6 March 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core==
==Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core==
-
<StructureSection load='5tf6' size='340' side='right' caption='[[5tf6]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
+
<StructureSection load='5tf6' size='340' side='right'caption='[[5tf6]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5tf6]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TF6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5TF6 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5tf6]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae] and [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TF6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5TF6 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5tf6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tf6 OCA], [http://pdbe.org/5tf6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5tf6 RCSB], [http://www.ebi.ac.uk/pdbsum/5tf6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5tf6 ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5tf6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tf6 OCA], [https://pdbe.org/5tf6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5tf6 RCSB], [https://www.ebi.ac.uk/pdbsum/5tf6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5tf6 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/PRP24_YEAST PRP24_YEAST]] Binds preferentially to the U4/U6 hybrid snRNAs. Can stimulate the annealing of U4 and U6. Could participate in both the formation and disassembly of the U4/U6 hybrid during splicing.
+
[https://www.uniprot.org/uniprot/PRP24_YEAST PRP24_YEAST] Binds preferentially to the U4/U6 hybrid snRNAs. Can stimulate the annealing of U4 and U6. Could participate in both the formation and disassembly of the U4/U6 hybrid during splicing.
-
<div style="background-color:#fffaf0;">
+
-
== Publication Abstract from PubMed ==
+
-
U6 small nuclear RNA (snRNA) is a key component of the active site of the spliceosome, a large ribonucleoprotein complex that catalyzes the splicing of precursor messenger RNA. Prior to its incorporation into the spliceosome, U6 is bound by the protein Prp24, which facilitates unwinding of the U6 internal stem-loop (ISL) so that it can pair with U4 snRNA. A previously reported crystal structure of the `core' of the U6 small nuclear ribonucleoprotein (snRNP) contained an ISL-stabilized A62G mutant of U6 bound to all four RNA-recognition motif (RRM) domains of Prp24 [Montemayor et al. (2014), Nature Struct. Mol. Biol. 21, 544-551]. The structure revealed a novel topology containing interlocked rings of protein and RNA that was not predicted by prior biochemical and genetic data. Here, the crystal structure of the U6 snRNP core with a wild-type ISL is reported. This complex crystallized in a new space group, apparently owing in part to the presence of an intramolecular cross-link in RRM1 that was not observed in the previously reported U6-A62G structure. The structure exhibits the same protein-RNA interface and maintains the unique interlocked topology. However, the orientation of the wild-type ISL is altered relative to the A62G mutant structure, suggesting inherent structural dynamics that may facilitate its pairing with U4. Consistent with their similar architectures in the crystalline state, the wild-type and A62G variants of U6 exhibit similar Prp24-binding affinities and electrophoretic mobilities when analyzed by gel-shift assay.
+
-
 
+
-
Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core.,Montemayor EJ, Didychuk AL, Liao H, Hu P, Brow DA, Butcher SE Acta Crystallogr D Struct Biol. 2017 Jan 1;73(Pt 1):1-8. doi:, 10.1107/S2059798316018222. Epub 2017 Jan 1. PMID:28045380<ref>PMID:28045380</ref>
+
-
 
+
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
<div class="pdbe-citations 5tf6" style="background-color:#fffaf0;"></div>
+
-
== References ==
+
-
<references/>
+
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Brow, D A]]
+
[[Category: Large Structures]]
-
[[Category: Butcher, S E]]
+
[[Category: Saccharomyces cerevisiae]]
-
[[Category: Montemayor, E J]]
+
[[Category: Saccharomyces cerevisiae S288C]]
-
[[Category: Ribonucleoprotein]]
+
[[Category: Brow DA]]
-
[[Category: Rna binding protein-rna complex]]
+
[[Category: Butcher SE]]
-
[[Category: Snrnp]]
+
[[Category: Montemayor EJ]]
-
[[Category: Spliceosome]]
+
-
[[Category: U6]]
+

Current revision

Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core

PDB ID 5tf6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5tf6"
Personal tools