This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5llj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (18:33, 18 October 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Maedi-Visna virus (MVV) integrase C-terminal domain (residues 220-276)==
==Maedi-Visna virus (MVV) integrase C-terminal domain (residues 220-276)==
-
<StructureSection load='5llj' size='340' side='right' caption='[[5llj]], [[Resolution|resolution]] 1.78&Aring;' scene=''>
+
<StructureSection load='5llj' size='340' side='right'caption='[[5llj]], [[Resolution|resolution]] 1.78&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5llj]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LLJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LLJ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5llj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Visna/maedi_virus_EV1_KV1772 Visna/maedi virus EV1 KV1772]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LLJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5LLJ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.78&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5llj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5llj OCA], [http://pdbe.org/5llj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5llj RCSB], [http://www.ebi.ac.uk/pdbsum/5llj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5llj ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5llj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5llj OCA], [https://pdbe.org/5llj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5llj RCSB], [https://www.ebi.ac.uk/pdbsum/5llj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5llj ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/POL_VILVK POL_VILVK]] During replicative cycle of retroviruses, the reverse-transcribed viral DNA is integrated into the host chromosome by the viral integrase enzyme. RNase H activity is associated with the reverse transcriptase.
+
[https://www.uniprot.org/uniprot/POL_VILVK POL_VILVK] During replicative cycle of retroviruses, the reverse-transcribed viral DNA is integrated into the host chromosome by the viral integrase enzyme. RNase H activity is associated with the reverse transcriptase.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 18: Line 19:
</div>
</div>
<div class="pdbe-citations 5llj" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5llj" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Retroviral integrase 3D structures|Retroviral integrase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Cherepanov, P]]
+
[[Category: Large Structures]]
-
[[Category: Maskell, D P]]
+
[[Category: Visna/maedi virus EV1 KV1772]]
-
[[Category: Pye, V E]]
+
[[Category: Cherepanov P]]
-
[[Category: C-terminal domain]]
+
[[Category: Maskell DP]]
-
[[Category: Integrase]]
+
[[Category: Pye VE]]
-
[[Category: Viral protein]]
+
-
[[Category: Visna/maedi virus]]
+

Current revision

Maedi-Visna virus (MVV) integrase C-terminal domain (residues 220-276)

PDB ID 5llj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools