5b3f

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:38, 6 November 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of phosphoribulokinase from Methanospirillum hungatei==
==Crystal structure of phosphoribulokinase from Methanospirillum hungatei==
-
<StructureSection load='5b3f' size='340' side='right' caption='[[5b3f]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+
<StructureSection load='5b3f' size='340' side='right'caption='[[5b3f]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5b3f]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B3F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5B3F FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5b3f]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanospirillum_hungatei_JF-1 Methanospirillum hungatei JF-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B3F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5B3F FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5b3f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b3f OCA], [http://pdbe.org/5b3f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5b3f RCSB], [http://www.ebi.ac.uk/pdbsum/5b3f PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5b3f ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5b3f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b3f OCA], [https://pdbe.org/5b3f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5b3f RCSB], [https://www.ebi.ac.uk/pdbsum/5b3f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5b3f ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q2FUB5_METHJ Q2FUB5_METHJ]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Two enzymes are considered to be unique to the photosynthetic Calvin-Benson cycle: ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO), responsible for CO2 fixation, and phosphoribulokinase (PRK). Some archaea possess bona fide RuBisCOs, despite not being photosynthetic organisms, but are thought to lack PRK. Here we demonstrate the existence in methanogenic archaea of a carbon metabolic pathway involving RuBisCO and PRK, which we term 'reductive hexulose-phosphate' (RHP) pathway. These archaea possess both RuBisCO and a catalytically active PRK whose crystal structure resembles that of photosynthetic bacterial PRK. Capillary electrophoresis-mass spectrometric analysis of metabolites reveals that the RHP pathway, which differs from the Calvin-Benson cycle only in a few steps, is active in vivo. Our work highlights evolutionary and functional links between RuBisCO-mediated carbon metabolic pathways in methanogenic archaea and photosynthetic organisms. Whether the RHP pathway allows for autotrophy (that is, growth exclusively with CO2 as carbon source) remains unknown.
 +
 +
A RuBisCO-mediated carbon metabolic pathway in methanogenic archaea.,Kono T, Mehrotra S, Endo C, Kizu N, Matusda M, Kimura H, Mizohata E, Inoue T, Hasunuma T, Yokota A, Matsumura H, Ashida H Nat Commun. 2017 Jan 13;8:14007. doi: 10.1038/ncomms14007. PMID:28082747<ref>PMID:28082747</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 5b3f" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Ashida, H]]
+
[[Category: Large Structures]]
-
[[Category: Matsumura, H]]
+
[[Category: Methanospirillum hungatei JF-1]]
-
[[Category: Archaea]]
+
[[Category: Ashida H]]
-
[[Category: Kinase]]
+
[[Category: Matsumura H]]
-
[[Category: Transferase]]
+

Current revision

Crystal structure of phosphoribulokinase from Methanospirillum hungatei

PDB ID 5b3f

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools