This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4v1s

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:20, 1 May 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Structure of the GH76 alpha-mannanase BT2949 from Bacteroides thetaiotaomicron==
==Structure of the GH76 alpha-mannanase BT2949 from Bacteroides thetaiotaomicron==
-
<StructureSection load='4v1s' size='340' side='right' caption='[[4v1s]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
+
<StructureSection load='4v1s' size='340' side='right'caption='[[4v1s]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4v1s]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V1S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4V1S FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4v1s]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron_VPI-5482 Bacteroides thetaiotaomicron VPI-5482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V1S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4V1S FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4v1r|4v1r]], [[4v27|4v27]], [[4v28|4v28]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Mannan_endo-1,6-alpha-mannosidase Mannan endo-1,6-alpha-mannosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.101 3.2.1.101] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4v1s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v1s OCA], [https://pdbe.org/4v1s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4v1s RCSB], [https://www.ebi.ac.uk/pdbsum/4v1s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4v1s ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4v1s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v1s OCA], [http://pdbe.org/4v1s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4v1s RCSB], [http://www.ebi.ac.uk/pdbsum/4v1s PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4v1s ProSAT]</span></td></tr>
+
</table>
</table>
-
<div style="background-color:#fffaf0;">
+
== Function ==
-
== Publication Abstract from PubMed ==
+
[https://www.uniprot.org/uniprot/Q8A3K5_BACTN Q8A3K5_BACTN]
-
The large bowel microbiota, a complex ecosystem resident within the gastrointestinal tract of all human beings and large mammals, functions as an essential, nonsomatic metabolic organ, hydrolysing complex dietary polysaccharides and modulating the host immune system to adequately tolerate ingested antigens. A significant member of this community, Bacteroides thetaiotaomicron, has evolved a complex system for sensing and processing a wide variety of natural glycoproducts in such a way as to provide maximum benefit to itself, the wider microbial community and the host. The immense ability of B. thetaiotaomicron as a `glycan specialist' resides in its enormous array of carbohydrate-active enzymes, many of which are arranged into polysaccharide-utilization loci (PULs) that are able to degrade sugar polymers that are often inaccessible to other gut residents, notably alpha-mannan. The B. thetaiotaomicron genome encodes ten putative alpha-mannanases spread across various PULs; however, little is known about the activity of these enzymes or the wider implications of alpha-mannan metabolism for the health of both the microbiota and the host. In this study, SAD phasing of a selenomethionine derivative has been used to investigate the structure of one such B. thetaiotaomicron enzyme, BT2949, which belongs to the GH76 family of alpha-mannanases. BT2949 presents a classical (alpha/alpha)6-barrel structure comprising a large extended surface cleft common to other GH76 family members. Analysis of the structure in conjunction with sequence alignments reveals the likely location of the catalytic active site of this noncanonical GH76.
+
-
 
+
-
Structure of the GH76 alpha-mannanase homolog, BT2949, from the gut symbiont Bacteroides thetaiotaomicron.,Thompson AJ, Cuskin F, Spears RJ, Dabin J, Turkenburg JP, Gilbert HJ, Davies GJ Acta Crystallogr D Biol Crystallogr. 2015 Feb;71(Pt 2):408-15. doi:, 10.1107/S1399004714026443. Epub 2015 Jan 23. PMID:25664752<ref>PMID:25664752</ref>
+
-
 
+
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
<div class="pdbe-citations 4v1s" style="background-color:#fffaf0;"></div>
+
-
== References ==
+
-
<references/>
+
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Mannan endo-1,6-alpha-mannosidase]]
+
[[Category: Bacteroides thetaiotaomicron VPI-5482]]
-
[[Category: Cuskin, F]]
+
[[Category: Large Structures]]
-
[[Category: Dabin, J]]
+
[[Category: Cuskin F]]
-
[[Category: Davies, G J]]
+
[[Category: Dabin J]]
-
[[Category: Gilbert, H J]]
+
[[Category: Davies GJ]]
-
[[Category: Spears, R J]]
+
[[Category: Gilbert HJ]]
-
[[Category: Thompson, A J]]
+
[[Category: Spears RJ]]
-
[[Category: Turkenburg, J P]]
+
[[Category: Thompson AJ]]
-
[[Category: Cazy]]
+
[[Category: Turkenburg JP]]
-
[[Category: Enzyme-carbohydrate interaction]]
+
-
[[Category: Gh76]]
+
-
[[Category: Glycoside hydrolase]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Polysaccharide utilisation]]
+

Current revision

Structure of the GH76 alpha-mannanase BT2949 from Bacteroides thetaiotaomicron

PDB ID 4v1s

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4v1s"
Personal tools