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| | ==Crystal structure of a Fab== | | ==Crystal structure of a Fab== |
| - | <StructureSection load='4nki' size='340' side='right' caption='[[4nki]], [[Resolution|resolution]] 2.41Å' scene=''> | + | <StructureSection load='4nki' size='340' side='right'caption='[[4nki]], [[Resolution|resolution]] 2.41Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4nki]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NKI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4NKI FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4nki]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NKI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4NKI FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.41Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4nki FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nki OCA], [http://pdbe.org/4nki PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4nki RCSB], [http://www.ebi.ac.uk/pdbsum/4nki PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4nki ProSAT]</span></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> |
| | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4nki FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nki OCA], [https://pdbe.org/4nki PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4nki RCSB], [https://www.ebi.ac.uk/pdbsum/4nki PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4nki ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Jiang, X]] | + | [[Category: Homo sapiens]] |
| - | [[Category: Antibody]] | + | [[Category: Large Structures]] |
| - | [[Category: Cytokine]] | + | [[Category: Jiang X]] |
| - | [[Category: Immunoglobulin]]
| + | |
| - | [[Category: Nonoclonal antibody]]
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| - | [[Category: Pd-l1]]
| + | |
| - | [[Category: Soluble protein]]
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| Structural highlights
Publication Abstract from PubMed
The binding of programmed death ligand 1 protein (PD-L1) to its receptor programmed death protein 1 (PD-1) mediates immunoevasion in cancer and chronic viral infections, presenting an important target for therapeutic intervention. Several monoclonal antibodies targeting the PD-L1/PD-1 signaling axis are undergoing clinical trials; however, the epitopes of these antibodies have not been described. We have combined orthogonal approaches to localize and characterize the epitope of a monoclonal antibody directed against PD-L1 at good resolution and with high confidence. Limited proteolysis and mass spectrometry were applied to reveal that the epitope resides in the first immunoglobulin domain of PD-L1. Hydrogen-deuterium exchange mass spectrometry (HDX-MS) was used to identify a conformational epitope comprised of discontinuous strands that fold to form a beta sheet in the native structure. This beta sheet presents an epitope surface that significantly overlaps with the PD-1 binding interface, consistent with a desired PD-1 competitive mechanism of action for the antibody. Surface plasmon resonance screening of mutant PD-L1 variants confirmed that the region identified by HDX-MS is critical for the antibody interaction and further defined specific residues contributing to the binding energy. Taken together, the results are consistent with the observed inhibitory activity of the antibody on PD-L1-mediated immune evasion. This is the first report of an epitope for any antibody targeting PD-L1 and demonstrates the power of combining orthogonal epitope mapping techniques. Copyright (c) 2015 John Wiley & Sons, Ltd.
Epitope characterization of an anti-PD-L1 antibody using orthogonal approaches.,Hao G, Wesolowski JS, Jiang X, Lauder S, Sood VD J Mol Recognit. 2015 Apr;28(4):269-76. doi: 10.1002/jmr.2418. Epub 2015 Feb 9. PMID:25664688[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Hao G, Wesolowski JS, Jiang X, Lauder S, Sood VD. Epitope characterization of an anti-PD-L1 antibody using orthogonal approaches. J Mol Recognit. 2015 Apr;28(4):269-76. doi: 10.1002/jmr.2418. Epub 2015 Feb 9. PMID:25664688 doi:http://dx.doi.org/10.1002/jmr.2418
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