5wv3

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==Crystal structure of bovine lactoperoxidase with a partial Glu258-heme linkage at 2.07 A resolution.==
==Crystal structure of bovine lactoperoxidase with a partial Glu258-heme linkage at 2.07 A resolution.==
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<StructureSection load='5wv3' size='340' side='right' caption='[[5wv3]], [[Resolution|resolution]] 2.07&Aring;' scene=''>
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<StructureSection load='5wv3' size='340' side='right'caption='[[5wv3]], [[Resolution|resolution]] 2.07&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5wv3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=5k1e 5k1e]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WV3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5WV3 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5wv3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WV3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5WV3 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=OSM:1-(OXIDOSULFANYL)METHANAMINE'>OSM</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.07&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=OSM:1-(OXIDOSULFANYL)METHANAMINE'>OSM</scene>, <scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5k1e|5k1e]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5wv3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wv3 OCA], [https://pdbe.org/5wv3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5wv3 RCSB], [https://www.ebi.ac.uk/pdbsum/5wv3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5wv3 ProSAT]</span></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peroxidase Peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.7 1.11.1.7] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5wv3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wv3 OCA], [http://pdbe.org/5wv3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5wv3 RCSB], [http://www.ebi.ac.uk/pdbsum/5wv3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5wv3 ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/PERL_BOVIN PERL_BOVIN]] LPO is an antimicrobial agent. It is thought to help protect the udder from infection and promote growth in newborn calves.
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[https://www.uniprot.org/uniprot/PERL_BOVIN PERL_BOVIN] LPO is an antimicrobial agent. It is thought to help protect the udder from infection and promote growth in newborn calves.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The mammalian heme peroxidases including lactoperoxidase (LPO), myeloperoxidase (MPO), eosinophil peroxidase (EPO) and thyroid peroxidase (TPO) contain a covalently linked heme moiety. Initially, it was believed that the heme group was fully cross-linked to protein molecule through at least two ester linkages involving conserved glutamate and aspartate residues with 1-methyl and 5-methyl groups of pyrrole rings A and C respectively. In MPO, an additional sulfonium ion linkage was present between 2-vinyl group of pyrrole ring A of the heme moiety and a methionine residue of the protein. These linkages were formed through a self processing mechanism. Subsequently, biochemical studies indicated that the heme moiety was partially attached to protein. The recent structural studies have shown that the covalent linkage involving glutamate and 1-methyl group of pyrrole ring of heme moiety was partially formed. When glutamate is not covalently linked to heme moiety, its side chain occupies a position in the substrate binding site on the distal heme side and blocks the substrate binding site leading to inactivation. However, an exposure to H2O2 converts it to a fully covalently linked state with heme. Thus in mammalian heme peroxidases, the Glu-heme linkage is essential for catalytic action.
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Structural basis of activation of mammalian heme peroxidases.,Singh PK, Iqbal N, Sirohi HV, Bairagya HR, Kaur P, Sharma S, Singh TP Prog Biophys Mol Biol. 2018 Mar;133:49-55. doi: 10.1016/j.pbiomolbio.2017.11.003., Epub 2017 Nov 22. PMID:29174286<ref>PMID:29174286</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 5wv3" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Lactoperoxidase|Lactoperoxidase]]
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Bos taurus]]
[[Category: Bos taurus]]
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[[Category: Peroxidase]]
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[[Category: Large Structures]]
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[[Category: Kaur, P]]
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[[Category: Kaur P]]
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[[Category: Sharma, S]]
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[[Category: Sharma S]]
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[[Category: Singh, P K]]
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[[Category: Singh PK]]
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[[Category: Singh, T P]]
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[[Category: Singh TP]]
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[[Category: Sirohi, H V]]
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[[Category: Sirohi HV]]
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[[Category: Oxidoreductase]]
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Current revision

Crystal structure of bovine lactoperoxidase with a partial Glu258-heme linkage at 2.07 A resolution.

PDB ID 5wv3

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