This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5kxj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:00, 27 September 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal Structure of L-Aspartate Oxidase from Salmonella typhimurium in the Complex with Substrate L-Aspartate==
==Crystal Structure of L-Aspartate Oxidase from Salmonella typhimurium in the Complex with Substrate L-Aspartate==
-
<StructureSection load='5kxj' size='340' side='right' caption='[[5kxj]], [[Resolution|resolution]] 1.87&Aring;' scene=''>
+
<StructureSection load='5kxj' size='340' side='right'caption='[[5kxj]], [[Resolution|resolution]] 1.87&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5kxj]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KXJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KXJ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5kxj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KXJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5KXJ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ASP:ASPARTIC+ACID'>ASP</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.87&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/L-aspartate_oxidase L-aspartate oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.16 1.4.3.16] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ASP:ASPARTIC+ACID'>ASP</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5kxj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kxj OCA], [http://pdbe.org/5kxj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kxj RCSB], [http://www.ebi.ac.uk/pdbsum/5kxj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kxj ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5kxj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kxj OCA], [https://pdbe.org/5kxj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5kxj RCSB], [https://www.ebi.ac.uk/pdbsum/5kxj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5kxj ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/NADB_SALTY NADB_SALTY]] Catalyzes the oxidation of L-aspartate to iminoaspartate.
+
[https://www.uniprot.org/uniprot/NADB_SALTY NADB_SALTY] Catalyzes the oxidation of L-aspartate to iminoaspartate.
 +
 
 +
==See Also==
 +
*[[Lysozyme 3D structures|Lysozyme 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: L-aspartate oxidase]]
+
[[Category: Large Structures]]
-
[[Category: Anderson, W F]]
+
[[Category: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]]
-
[[Category: Structural genomic]]
+
[[Category: Anderson WF]]
-
[[Category: Gu, M]]
+
[[Category: Gu M]]
-
[[Category: Joachimiak, A]]
+
[[Category: Joachimiak A]]
-
[[Category: Kim, Y]]
+
[[Category: Kim Y]]
-
[[Category: Makowska-Grzyska, M]]
+
[[Category: Makowska-Grzyska M]]
-
[[Category: Maltseva, N]]
+
[[Category: Maltseva N]]
-
[[Category: Mulligan, R]]
+
[[Category: Mulligan R]]
-
[[Category: Osipiuk, J]]
+
[[Category: Osipiuk J]]
-
[[Category: Shatsman, S]]
+
[[Category: Shatsman S]]
-
[[Category: Alpha-beta structure]]
+
-
[[Category: Alpha-beta-alpha sandwich]]
+
-
[[Category: Csgid]]
+
-
[[Category: Oxidoreductase]]
+

Current revision

Crystal Structure of L-Aspartate Oxidase from Salmonella typhimurium in the Complex with Substrate L-Aspartate

PDB ID 5kxj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools