5plu

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "5plu" [edit=sysop:move=sysop])
Current revision (13:03, 6 March 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5plu is ON HOLD
+
==PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 151)==
 +
<StructureSection load='5plu' size='340' side='right'caption='[[5plu]], [[Resolution|resolution]] 1.47&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[5plu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5PLU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5PLU FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.47&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=OGA:N-OXALYLGLYCINE'>OGA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5plu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5plu OCA], [https://pdbe.org/5plu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5plu RCSB], [https://www.ebi.ac.uk/pdbsum/5plu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5plu ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/KDM4D_HUMAN KDM4D_HUMAN] Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-4', H3 'Lys-27', H3 'Lys-36' nor H4 'Lys-20'. Demethylates both di- and trimethylated H3 'Lys-9' residue, while it has no activity on monomethylated residues. Demethylation of Lys residue generates formaldehyde and succinate.<ref>PMID:16603238</ref>
-
Authors: Krojer, T.
+
==See Also==
-
 
+
*[[Jumonji domain-containing protein 3D structures|Jumonji domain-containing protein 3D structures]]
-
Description: PanDDA analysis group deposition --Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 151)
+
== References ==
-
[[Category: Unreleased Structures]]
+
<references/>
-
[[Category: Krojer, T]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Homo sapiens]]
 +
[[Category: Large Structures]]
 +
[[Category: Arrowsmith CH]]
 +
[[Category: Bountra C]]
 +
[[Category: Bradley AR]]
 +
[[Category: Brandao-Neto J]]
 +
[[Category: Brennan PE]]
 +
[[Category: Burgess-Brown N]]
 +
[[Category: Collins P]]
 +
[[Category: Cox O]]
 +
[[Category: Dias A]]
 +
[[Category: Douangamath A]]
 +
[[Category: Edwards A]]
 +
[[Category: Fairhead M]]
 +
[[Category: Krojer T]]
 +
[[Category: MacLean E]]
 +
[[Category: Ng J]]
 +
[[Category: Oppermann U]]
 +
[[Category: Pearce NM]]
 +
[[Category: Renjie Z]]
 +
[[Category: Sethi R]]
 +
[[Category: Szykowska A]]
 +
[[Category: Talon R]]
 +
[[Category: Vollmar M]]
 +
[[Category: Wright N]]
 +
[[Category: Von Delft F]]

Current revision

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 151)

PDB ID 5plu

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5plu"
Personal tools