5pmm

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m (Protected "5pmm" [edit=sysop:move=sysop])
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'''Unreleased structure'''
 
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The entry 5pmm is ON HOLD
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==PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 180)==
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<StructureSection load='5pmm' size='340' side='right'caption='[[5pmm]], [[Resolution|resolution]] 1.39&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5pmm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5PMM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5PMM FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.39&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=OGA:N-OXALYLGLYCINE'>OGA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5pmm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5pmm OCA], [https://pdbe.org/5pmm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5pmm RCSB], [https://www.ebi.ac.uk/pdbsum/5pmm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5pmm ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/KDM4D_HUMAN KDM4D_HUMAN] Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-4', H3 'Lys-27', H3 'Lys-36' nor H4 'Lys-20'. Demethylates both di- and trimethylated H3 'Lys-9' residue, while it has no activity on monomethylated residues. Demethylation of Lys residue generates formaldehyde and succinate.<ref>PMID:16603238</ref>
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Authors: Krojer, T.
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==See Also==
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*[[Jumonji domain-containing protein 3D structures|Jumonji domain-containing protein 3D structures]]
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Description: PanDDA analysis group deposition --Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 180)
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== References ==
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[[Category: Unreleased Structures]]
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<references/>
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[[Category: Krojer, T]]
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Arrowsmith CH]]
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[[Category: Bountra C]]
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[[Category: Bradley AR]]
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[[Category: Brandao-Neto J]]
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[[Category: Brennan PE]]
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[[Category: Burgess-Brown N]]
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[[Category: Collins P]]
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[[Category: Cox O]]
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[[Category: Dias A]]
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[[Category: Douangamath A]]
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[[Category: Edwards A]]
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[[Category: Fairhead M]]
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[[Category: Krojer T]]
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[[Category: MacLean E]]
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[[Category: Ng J]]
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[[Category: Oppermann U]]
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[[Category: Pearce NM]]
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[[Category: Renjie Z]]
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[[Category: Sethi R]]
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[[Category: Szykowska A]]
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[[Category: Talon R]]
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[[Category: Vollmar M]]
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[[Category: Wright N]]
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[[Category: Von Delft F]]

Current revision

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 180)

PDB ID 5pmm

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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