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1t1m

From Proteopedia

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[[Image:1t1m.gif|left|200px]]
 
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{{Structure
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==Binding position of ribosome recycling factor (RRF) on the E. coli 70S ribosome==
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|PDB= 1t1m |SIZE=350|CAPTION= <scene name='initialview01'>1t1m</scene>
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<SX load='1t1m' size='340' side='right' viewer='molstar' caption='[[1t1m]], [[Resolution|resolution]] 12.00&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=A:ADENOSINE-5&#39;-MONOPHOSPHATE'>A</scene>, <scene name='pdbligand=C:CYTIDINE-5&#39;-MONOPHOSPHATE'>C</scene>, <scene name='pdbligand=G:GUANOSINE-5&#39;-MONOPHOSPHATE'>G</scene>, <scene name='pdbligand=U:URIDINE-5&#39;-MONOPHOSPHATE'>U</scene>
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<table><tr><td colspan='2'>[[1t1m]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T1M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T1M FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 12&#8491;</td></tr>
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|GENE=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t1m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t1m OCA], [https://pdbe.org/1t1m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1t1m RCSB], [https://www.ebi.ac.uk/pdbsum/1t1m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t1m ProSAT]</span></td></tr>
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|DOMAIN=
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</table>
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|RELATEDENTRY=[[1kc9|1KC9]], [[1fjf|1FJF]], [[1dd5|1DD5]], [[1ek8|1EK8]]
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== Function ==
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1t1m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t1m OCA], [http://www.ebi.ac.uk/pdbsum/1t1m PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1t1m RCSB]</span>
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[https://www.uniprot.org/uniprot/P84154_ECOLX P84154_ECOLX] Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another (By similarity).[HAMAP-Rule:MF_00040]
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}}
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t1/1t1m_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1t1m ConSurf].
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<div style="clear:both"></div>
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'''Binding position of ribosome recycling factor (RRF) on the E. coli 70S ribosome'''
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==See Also==
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*[[Ribosome recycling factor|Ribosome recycling factor]]
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__TOC__
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==Overview==
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</SX>
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After the termination step of protein synthesis, a deacylated tRNA and mRNA remain associated with the ribosome. The ribosome-recycling factor (RRF), together with elongation factor G (EF-G), disassembles this posttermination complex into mRNA, tRNA, and the ribosome. We have obtained a three-dimensional cryo-electron microscopic map of a complex of the Escherichia coli 70S ribosome and RRF. We find that RRF interacts mainly with the segments of the large ribosomal subunit's (50S) rRNA helices that are involved in the formation of two central intersubunit bridges, B2a and B3. The binding of RRF induces considerable conformational changes in some of the functional domains of the ribosome. As compared to its binding position derived previously by hydroxyl radical probing study, we find that RRF binds further inside the intersubunit space of the ribosome such that the tip of its domain I is shifted (by approximately 13 A) toward protein L5 within the central protuberance of the 50S subunit, and domain II is oriented more toward the small ribosomal subunit (30S). Overlapping binding sites of RRF, EF-G, and the P-site tRNA suggest that the binding of EF-G would trigger the removal of deacylated tRNA from the P site by moving RRF toward the ribosomal E site, and subsequent removal of mRNA may be induced by a shift in the position of 16S rRNA helix 44, which harbors part of the mRNA.
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==About this Structure==
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1T1M is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T1M OCA].
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==Reference==
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Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: functional implications., Agrawal RK, Sharma MR, Kiel MC, Hirokawa G, Booth TM, Spahn CM, Grassucci RA, Kaji A, Frank J, Proc Natl Acad Sci U S A. 2004 Jun 15;101(24):8900-5. Epub 2004 Jun 3. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15178758 15178758]
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[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Agrawal, R K.]]
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[[Category: Agrawal RK]]
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[[Category: Booth, T M.]]
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[[Category: Booth TM]]
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[[Category: Frank, J.]]
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[[Category: Frank J]]
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[[Category: Grassucci, R A.]]
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[[Category: Grassucci RA]]
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[[Category: Hirokawa, G.]]
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[[Category: Hirokawa G]]
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[[Category: Kaji, A.]]
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[[Category: Kaji A]]
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[[Category: Kiel, M C.]]
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[[Category: Kiel MC]]
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[[Category: Sharma, M R.]]
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[[Category: Sharma MR]]
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[[Category: Spahn, C M.]]
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[[Category: Spahn CM]]
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[[Category: rrf binding position on the ribosome]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 23:49:56 2008''
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Current revision

Binding position of ribosome recycling factor (RRF) on the E. coli 70S ribosome

1t1m, resolution 12.00Å

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