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4xj5

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==Crystal structure of Vibrio cholerae DncV 3'-deoxy GTP bound form==
==Crystal structure of Vibrio cholerae DncV 3'-deoxy GTP bound form==
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<StructureSection load='4xj5' size='340' side='right' caption='[[4xj5]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
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<StructureSection load='4xj5' size='340' side='right'caption='[[4xj5]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4xj5]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XJ5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4XJ5 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4xj5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 Vibrio cholerae O1 biovar El Tor str. N16961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XJ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4XJ5 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GH3:3-DEOXY-GUANOSINE-5-TRIPHOSPHATE'>GH3</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.552&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4xj1|4xj1]], [[4xj3|4xj3]], [[4xj4|4xj4]], [[4xj6|4xj6]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GH3:3-DEOXY-GUANOSINE-5-TRIPHOSPHATE'>GH3</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4xj5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xj5 OCA], [http://pdbe.org/4xj5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4xj5 RCSB], [http://www.ebi.ac.uk/pdbsum/4xj5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4xj5 ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4xj5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xj5 OCA], [https://pdbe.org/4xj5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4xj5 RCSB], [https://www.ebi.ac.uk/pdbsum/4xj5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4xj5 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/DNCV_VIBCH DNCV_VIBCH]] Catalyzes the synthesis of cyclic AMP-GMP from ATP and GTP. Is also able to produce c-di-AMP and c-di-GMP from ATP and GTP, respectively; however, c-AMP-GMP is the dominant molecule produced by DncV in vivo. Is required for efficient V.cholerae intestinal colonization, and down-regulates the colonization-influencing process of chemotaxis. Is not active with dATP, TTP, UTP, and CTP.
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[https://www.uniprot.org/uniprot/DNCV_VIBCH DNCV_VIBCH] Catalyzes the synthesis of cyclic AMP-GMP from ATP and GTP. Is also able to produce c-di-AMP and c-di-GMP from ATP and GTP, respectively; however, c-AMP-GMP is the dominant molecule produced by DncV in vivo. Is required for efficient V.cholerae intestinal colonization, and down-regulates the colonization-influencing process of chemotaxis. Is not active with dATP, TTP, UTP, and CTP.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 4xj5" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 4xj5" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Cyclic GMP-AMP synthase 3D synthase|Cyclic GMP-AMP synthase 3D synthase]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Ishii, R]]
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[[Category: Large Structures]]
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[[Category: Ishitani, R]]
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[[Category: Vibrio cholerae O1 biovar El Tor str. N16961]]
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[[Category: Kato, K]]
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[[Category: Ishii R]]
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[[Category: Nureki, O]]
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[[Category: Ishitani R]]
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[[Category: Bacterial virulence]]
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[[Category: Kato K]]
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[[Category: Cyclic gmp-amp synthase]]
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[[Category: Nureki O]]
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[[Category: Nucleotidyltransferase]]
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[[Category: Transferase]]
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Current revision

Crystal structure of Vibrio cholerae DncV 3'-deoxy GTP bound form

PDB ID 4xj5

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